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Atp5b ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit [ Mus musculus (house mouse) ]

Gene ID: 11947, updated on 23-Jun-2021

Summary

Official Symbol
Atp5bprovided by MGI
Official Full Name
ATP synthase, H+ transporting mitochondrial F1 complex, beta subunitprovided by MGI
Primary source
MGI:MGI:107801
See related
Ensembl:ENSMUSG00000025393
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Atp5f1b
Expression
Ubiquitous expression in heart adult (RPKM 1957.4), kidney adult (RPKM 1315.7) and 28 other tissues See more
Orthologs
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Genomic context

See Atp5b in Genome Data Viewer
Location:
10; 10 D3
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (127919176..127926257)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (128083307..128090388)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (127520363..127527444)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene nascent polypeptide-associated complex alpha polypeptide Neighboring gene prostaglandin E synthase 3 Neighboring gene predicted gene, 47438 Neighboring gene small nucleolar RNA, C/D box 59A Neighboring gene microRNA 677 Neighboring gene bromodomain adjacent to zinc finger domain, 2A Neighboring gene predicted gene, 51821 Neighboring gene RNA binding motif, single stranded interacting protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ADP binding ISO
Inferred from Sequence Orthology
more info
 
enables ATP binding ISO
Inferred from Sequence Orthology
more info
 
enables MHC class I protein binding ISO
Inferred from Sequence Orthology
more info
 
enables angiostatin binding ISO
Inferred from Sequence Orthology
more info
 
enables calcium ion binding ISO
Inferred from Sequence Orthology
more info
 
enables lipoprotein particle receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
contributes_to proton-transporting ATP synthase activity, rotational mechanism IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
contributes_to proton-transporting ATP synthase activity, rotational mechanism ISO
Inferred from Sequence Orthology
more info
 
enables proton-transporting ATP synthase activity, rotational mechanism ISO
Inferred from Sequence Orthology
more info
 
enables proton-transporting ATPase activity, rotational mechanism ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cell surface ISO
Inferred from Sequence Orthology
more info
 
located_in membrane ISO
Inferred from Sequence Orthology
more info
 
located_in membrane raft ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrial inner membrane HDA PubMed 
located_in mitochondrial inner membrane ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrial membrane ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrial nucleoid ISO
Inferred from Sequence Orthology
more info
 
part_of mitochondrial proton-transporting ATP synthase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of mitochondrial proton-transporting ATP synthase complex ISO
Inferred from Sequence Orthology
more info
 
part_of mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion HDA PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
located_in myelin sheath HDA PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
part_of proton-transporting ATP synthase complex ISO
Inferred from Sequence Orthology
more info
 
part_of proton-transporting ATP synthase complex, catalytic core F(1) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of proton-transporting ATP synthase complex, catalytic core F(1) ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
ATP synthase subunit beta, mitochondrial
Names
ATP synthase F1 subunit beta
ATP synthase, H+ transporting mitochondrial F1 complex, alpha subunit
mitochondrial ATP synthase, H+ transporting F1 complex beta subunit
NP_058054.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016774.3NP_058054.2  ATP synthase subunit beta, mitochondrial precursor

    See identical proteins and their annotated locations for NP_058054.2

    Status: VALIDATED

    Source sequence(s)
    AC131120
    Consensus CDS
    CCDS24259.1
    UniProtKB/Swiss-Prot
    P56480
    Related
    ENSMUSP00000026459.6, ENSMUST00000026459.6
    Conserved Domains (1) summary
    PRK09280
    Location:58524
    PRK09280; F0F1 ATP synthase subunit beta; Validated

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    127919176..127926257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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