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tbx3a T-box transcription factor 3a [ Scyliorhinus canicula (smaller spotted catshark) ]

Gene ID: 119962785, updated on 21-Mar-2024

Summary

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Gene symbol
tbx3a
Gene description
T-box transcription factor 3a
Gene type
protein coding
RefSeq status
MODEL
Organism
Scyliorhinus canicula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
Also known as
Tbx3
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
100 current sScyCan1.1 (GCF_902713615.1) 1 NC_052146.1 (53107770..53116151, complement)

Chromosome 1 - NC_052146.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 19 Neighboring gene T-box transcription factor 5b Neighboring gene uncharacterized LOC119962793 Neighboring gene uncharacterized LOC119962796 Neighboring gene uncharacterized LOC119977352

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052146.1 Chromosome 1 Reference sScyCan1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A molecular analysis of neurogenic placode and cranial sensory ganglion development in the shark, Scyliorhinus canicula. O'Neill P, et al. Dev Biol, 2007 Apr 1. PMID 17234174, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac chamber development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart looping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor TBX3a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sScyCan1.1 Primary Assembly

Genomic

  1. NC_052146.1 Reference sScyCan1.1 Primary Assembly

    Range
    53107770..53116151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038790876.1 → XP_038646804.1  T-box transcription factor TBX3a

    Conserved Domains (2) summary
    pfam12598
    Location:304 → 381
    TBX; T-box transcription factor
    cd20188
    Location:105 → 286
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins
Nucleotide Protein
Heading Accession and Version

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