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PTCH1 patched 1 [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120408524, updated on 21-Mar-2024

Summary

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Gene symbol
PTCH1
Gene description
patched 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See PTCH1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
24
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 6 NC_052628.1 (83755344..83832965)

Linkage Group 6 - NC_052628.1Genomic Context describing neighboring genes Neighboring gene ERCC excision repair 6 like 2 Neighboring gene uncharacterized LOC120407900 Neighboring gene uncharacterized LOC120408525 Neighboring gene uncharacterized LOC120407919 Neighboring gene FA complementation group C Neighboring gene aminopeptidase O (putative) Neighboring gene uncharacterized LOC120407920

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052628.1 Chromosome 6 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hedgehog family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hedgehog receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables smoothened binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein patched homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052628.1 Reference ASM1616193v1 Primary Assembly

    Range
    83755344..83832965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039545589.1 → XP_039401523.1  protein patched homolog 1

    Conserved Domains (1) summary
    TIGR00918
    Location:106 → 1269
    2A060602; The Eukaryotic (Putative) Sterol Transporter (EST) Family
Nucleotide Protein
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Gene LinkOut

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