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LOC121175364 Sharpr-MPRA regulatory region 9446 [ Homo sapiens (human) ]

Gene ID: 121175364, updated on 23-Nov-2021

Summary

Gene symbol
LOC121175364
Gene description
Sharpr-MPRA regulatory region 9446
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic sequence was predicted to be a transcriptional regulatory region based on chromatin state analysis from the ENCODE (ENCyclopedia Of DNA Elements) project. It was validated as a functional enhancer by the Sharpr-MPRA technique (Systematic high-resolution activation and repression profiling with reporter tiling using massively parallel reporter assays) in K562 erythroleukemia cells (group: K562 Activating DNase unmatched - State 25:Art, potential CNV or repetitive artifacts). [provided by RefSeq, Apr 2021]
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Genomic context

See LOC121175364 in Genome Data Viewer
Location:
7q
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (128459375..128459669)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene RNA, U7 small nuclear 54 pseudogene Neighboring gene HILPDA antisense RNA 1 Neighboring gene hypoxia inducible lipid droplet associated Neighboring gene methyltransferase 2B, methylcytidine Neighboring gene uncharacterized LOC101928451 Neighboring gene ribosomal protein S10 pseudogene 15

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_074296.1 

    Range
    101..395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    128459375..128459669
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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