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LOC121394809 E3 ubiquitin-protein ligase TRIM7-like [ Xenopus laevis (African clawed frog) ]

Gene ID: 121394809, updated on 9-Oct-2021

Summary

Gene symbol
LOC121394809
Gene description
E3 ubiquitin-protein ligase TRIM7-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

See LOC121394809 in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (1823191..1825987, complement)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM7-like Neighboring gene uncharacterized LOC121394793 Neighboring gene uncharacterized LOC108704622 Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25 Neighboring gene uncharacterized LOC108704627

Genomic regions, transcripts, and products

Genomic Sequence:
NC_054381.1 Chromosome 6L Reference Xenopus_laevis_v10.1 Primary Assembly

General protein information

Preferred Names
E3 ubiquitin-protein ligase TRIM7-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    1823191..1825987 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041566922.1XP_041422856.1  E3 ubiquitin-protein ligase TRIM7-like

    Conserved Domains (5) summary
    smart00502
    Location:182301
    BBC; B-Box C-terminal domain
    cd12891
    Location:352523
    SPRY_PRY_C-I_2; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM14-like, TRIM16-like, TRIM25-like, TRIM47-like, TRIM65 and RNF135, and stonustoxin
    cd19769
    Location:137183
    Bbox2_TRIM16-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM16, TRIM29, TRIM47 and similar proteins
    cl00034
    Location:90130
    Bbox_SF; B-box-type zinc finger superfamily
    cl17238
    Location:955
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
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