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Capn5 calpain 5 [ Mus musculus (house mouse) ]

Gene ID: 12337, updated on 11-Apr-2024

Summary

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Official Symbol
Capn5provided by MGI
Official Full Name
calpain 5provided by MGI
Primary source
MGI:MGI:1100859
See related
Ensembl:ENSMUSG00000035547 AllianceGenome:MGI:1100859
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
nCL-3
Summary
The protein encoded by this gene is a member of the calpain family of proteins. Unlike many members of the calpain gene family, this gene lacks a calmodulin-like domain, required for calcium binding. Mouse models for Huntington's disease displayed increased levels of the protein encoded by this gene. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]
Expression
Broad expression in colon adult (RPKM 41.6), genital fat pad adult (RPKM 35.6) and 25 other tissues See more
Orthologs
human all
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Genomic context

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Location:
7 E1; 7 53.57 cM
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (97770766..97828148, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (98121559..98178946, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene glycerophosphodiester phosphodiesterase domain containing 4 Neighboring gene ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog pseudogene Neighboring gene myosin VIIA Neighboring gene STARR-seq mESC enhancer starr_19616 Neighboring gene STARR-positive B cell enhancer mm9_chr7:105268750-105269051 Neighboring gene STARR-positive B cell enhancer mm9_chr7:105326664-105326964 Neighboring gene STARR-seq mESC enhancer starr_19624 Neighboring gene olfactory marker protein Neighboring gene predicted gene, 16938 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 Neighboring gene alkaline ceramidase 3 Neighboring gene STARR-seq mESC enhancer starr_19625 Neighboring gene STARR-seq mESC enhancer starr_19626 Neighboring gene STARR-positive B cell enhancer mm9_chr7:105457877-105458178 Neighboring gene STARR-seq mESC enhancer starr_19627

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Calpain-5 gene expression in the mouse eye and brain. Schaefer K, et al. BMC Res Notes, 2017 Nov 21. PMID 29157313, Free PMC Article
  2. Capn5 is expressed in a subset of T cells and is dispensable for development. Franz T, et al. Mol Cell Biol, 2004 Feb. PMID 14749380, Free PMC Article
  3. Characterization of mitochondrial calpain-5. Chukai Y, et al. Biochim Biophys Acta Mol Cell Res, 2021 Apr. PMID 33607190
  4. Olfactory receptor neurons express olfactory marker protein but not calpain 5 from the same genomic locus. Nakashima N, et al. Mol Brain, 2019 Jun 4. PMID 31164142, Free PMC Article
  5. CAPN5 mutation in hereditary uveitis: the R243L mutation increases calpain catalytic activity and triggers intraocular inflammation in a mouse model. Wert KJ, et al. Hum Mol Genet, 2015 Aug 15. PMID 25994508, Free PMC Article

See all (35) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Role of calpain-5 in cerebral ischemia and reperfusion injury.
    Title: Role of calpain-5 in cerebral ischemia and reperfusion injury.
  2. Characterization of mitochondrial calpain-5.
    Title: Characterization of mitochondrial calpain-5.
  3. Oolfactory receptor neurons express OMP but not CAPN5 from CAPN5 gene expression even though they are localized in the same genomic locus.
    Title: Olfactory receptor neurons express olfactory marker protein but not calpain 5 from the same genomic locus.
  4. Ocular examination of the retina of Capn5 KO mice by histology and electroretinography showed no significant abnormalities.
    Title: CAPN5 genetic inactivation phenotype supports therapeutic inhibition trials.
  5. mRNA in situ hybridization experiments were performed to identify the expression of CAPN5 in the mouse eye and brain
    Title: Calpain-5 gene expression in the mouse eye and brain.
  6. CAPN5 mutation in hereditary uveitis: the R243L mutation increases calpain catalytic activity and triggers intraocular inflammation
    Title: CAPN5 mutation in hereditary uveitis: the R243L mutation increases calpain catalytic activity and triggers intraocular inflammation in a mouse model.
  7. CAPN5 is found in punctate domains associated with promyelocytic leukemia (PML) protein within the nucleus.
    Title: Calpain 5 is highly expressed in the central nervous system (CNS), carries dual nuclear localization signals, and is associated with nuclear promyelocytic leukemia protein bodies.
  8. Despite the numerous expression sites of Capn5, the majority of Capn5-null mice were viable and fertile and appeared healthy
    Title: Capn5 is expressed in a subset of T cells and is dispensable for development.
  9. calpain-derived Htt fragmentation has a role in Huntington's disease and aberrant activation of calpains may play a role in HD pathogenesis
    Title: Inhibition of calpain cleavage of huntingtin reduces toxicity: accumulation of calpain/caspase fragments in the nucleus.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables cysteine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in proteolysis IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cell surface ISO
Inferred from Sequence Orthology
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in synapse IDA
Inferred from Direct Assay
more info
 PubMed 
located_in synapse ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
calpain-5
Names
new calpain 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001301250.1 → NP_001288179.1  calpain-5

    See identical proteins and their annotated locations for NP_001288179.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) contains an alternate exon in the 5' UTR and represents use of an alternate promoter, compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC119880, AI049109, AK139476, AK164293, BQ176356
    Consensus CDS
    CCDS21465.1
    UniProtKB/Swiss-Prot
    O08688, Q91YU0
    UniProtKB/TrEMBL
    Q3TPL4, Q3U2P3
    Related
    ENSMUSP00000102729.2, ENSMUST00000107112.2
    Conserved Domains (3) summary
    cd04046
    Location:515 → 638
    C2_Calpain; C2 domain present in Calpain proteins
    cd00214
    Location:352 → 498
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease

  2. NM_007602.4 → NP_031628.1  calpain-5

    See identical proteins and their annotated locations for NP_031628.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AI049109, AK139476, AK164293, BQ176356, BY794575
    Consensus CDS
    CCDS21465.1
    UniProtKB/Swiss-Prot
    O08688, Q91YU0
    UniProtKB/TrEMBL
    Q3TPL4, Q3U2P3
    Related
    ENSMUSP00000048183.8, ENSMUST00000040971.14
    Conserved Domains (3) summary
    cd04046
    Location:515 → 638
    C2_Calpain; C2 domain present in Calpain proteins
    cd00214
    Location:352 → 498
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    97770766..97828148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030242034.2 → XP_030097894.1  calpain-5 isoform X2

    UniProtKB/Swiss-Prot
    O08688, Q91YU0
    UniProtKB/TrEMBL
    Q3TPL4, Q3U2P3
    Conserved Domains (3) summary
    cd04046
    Location:515 → 638
    C2_Calpain; C2 domain present in Calpain proteins
    cd00214
    Location:352 → 498
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease

  2. XM_030242035.1 → XP_030097895.1  calpain-5 isoform X2

    UniProtKB/Swiss-Prot
    O08688, Q91YU0
    UniProtKB/TrEMBL
    Q3TPL4, Q3U2P3
    Conserved Domains (3) summary
    cd04046
    Location:515 → 638
    C2_Calpain; C2 domain present in Calpain proteins
    cd00214
    Location:352 → 498
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease

  3. XM_030242038.2 → XP_030097898.1  calpain-5 isoform X2

    UniProtKB/Swiss-Prot
    O08688, Q91YU0
    UniProtKB/TrEMBL
    Q3TPL4, Q3U2P3
    Conserved Domains (3) summary
    cd04046
    Location:515 → 638
    C2_Calpain; C2 domain present in Calpain proteins
    cd00214
    Location:352 → 498
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease

  4. XM_030242036.1 → XP_030097896.1  calpain-5 isoform X2

    UniProtKB/Swiss-Prot
    O08688, Q91YU0
    UniProtKB/TrEMBL
    Q3TPL4, Q3U2P3
    Conserved Domains (3) summary
    cd04046
    Location:515 → 638
    C2_Calpain; C2 domain present in Calpain proteins
    cd00214
    Location:352 → 498
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease

  5. XM_006507275.5 → XP_006507338.1  calpain-5 isoform X1

    UniProtKB/TrEMBL
    Q3U2P3
    Conserved Domains (3) summary
    cd04046
    Location:528 → 651
    C2_Calpain; C2 domain present in Calpain proteins
    cd00214
    Location:365 → 511
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    pfam00648
    Location:40 → 354
    Peptidase_C2; Calpain family cysteine protease

  6. XM_030242037.2 → XP_030097897.1  calpain-5 isoform X2

    UniProtKB/Swiss-Prot
    O08688, Q91YU0
    UniProtKB/TrEMBL
    Q3TPL4, Q3U2P3
    Conserved Domains (3) summary
    cd04046
    Location:515 → 638
    C2_Calpain; C2 domain present in Calpain proteins
    cd00214
    Location:352 → 498
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O08688.1 GenPept UniProtKB/Swiss-Prot:O08688

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