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LOC126860058 MED14-independent group 3 enhancer GRCh37_chr7:66809463-66810662 [ Homo sapiens (human) ]

Gene ID: 126860058, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126860058
Gene description
MED14-independent group 3 enhancer GRCh37_chr7:66809463-66810662
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 3 enhancer that depends on the BRD2, BRD4, P300/CBP and CDK7 cofactors, but it has limited or no dependence on the MED14 core Mediator complex subunit. [provided by RefSeq, Sep 2022]
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Genomic context

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See LOC126860058 in Genome Data Viewer
Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (67344476..67345675)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (68564245..68565444)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18220 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26092 Neighboring gene STAG3 cohesin complex component like 4 (pseudogene) Neighboring gene uncharacterized LOC105375337 Neighboring gene long intergenic non-protein coding RNA 1372 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:66842927-66843428 Neighboring gene Sharpr-MPRA regulatory region 817 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:66878660-66879348 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:66903113-66903614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:66903615-66904114 Neighboring gene NANOG hESC enhancer GRCh37_chr7:66977296-66977858 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:66980039-66980250 Neighboring gene NANOG hESC enhancer GRCh37_chr7:66987412-66987922 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:66990375-66991248 Neighboring gene MPRA-validated peak6551 silencer Neighboring gene uncharacterized LOC105375340 Neighboring gene MT-ATP6 pseudogene 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_084559.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    67344476..67345675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    68564245..68565444
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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