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LOC126861491 CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:29194325-29195524 [ Homo sapiens (human) ]

Gene ID: 126861491, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126861491
Gene description
CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:29194325-29195524
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 2 enhancer that depends on the BRD2, BRD4, P300/CBP, MED14 and CDK7 cofactors, with strong dependence on CDK7. [provided by RefSeq, Sep 2022]
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Genomic context

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Location:
chromosome: 12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (29041392..29042591)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (28913940..28915138)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak1639 silencer Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_27720 and experimental_27723 Neighboring gene ribosomal protein L29 pseudogene 27 Neighboring gene uncharacterized LOC105369711 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:28912143-28912760 Neighboring gene uncharacterized LOC124902907 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4317 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4318 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:29091715-29092914 Neighboring gene MPRA-validated peak1642 silencer Neighboring gene uncharacterized LOC101928735 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6156 Neighboring gene uncharacterized LOC124902908 Neighboring gene NANOG hESC enhancer GRCh37_chr12:29298636-29299137 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4319 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:29339379-29339880 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:29381828-29382473 Neighboring gene fatty acyl-CoA reductase 2 Neighboring gene uncharacterized LOC100506606

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_085990.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    29041392..29042591
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    28913940..28915138
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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