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LOC126861856 BRD4-independent group 4 enhancer GRCh37_chr13:110846747-110847946 [ Homo sapiens (human) ]

Gene ID: 126861856, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126861856
Gene description
BRD4-independent group 4 enhancer GRCh37_chr13:110846747-110847946
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 4 enhancer that depends on the BRD2, P300/CBP, MED14 and CDK7 cofactors, but it has limited or no dependence on the BRD4 bromodomain protein. [provided by RefSeq, Sep 2022]
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Genomic context

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Location:
chromosome: 13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (110194400..110195599)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (109422908..109424107)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 3082 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7991 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:110774733-110775932 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:110778445-110779253 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:110779254-110780061 Neighboring gene uncharacterized LOC101927712 Neighboring gene uncharacterized LOC124903272 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:110788698-110789312 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:110789313-110789927 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5500 Neighboring gene long intergenic non-protein coding RNA 3032 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:110806879-110807510 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:110807511-110808142 Neighboring gene collagen type IV alpha 1 chain Neighboring gene uncharacterized LOC124903212 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:110935768-110936268 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:110959260-110960093 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:110960094-110960926 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:110971991-110973190 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:110979365-110980133 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:110990505-110991006 Neighboring gene collagen type IV alpha 2 chain Neighboring gene microRNA 8073

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_086354.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    110194400..110195599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    109422908..109424107
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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