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scaRNA:PsiU2-38.40.42 small Cajal body-specific RNA : PsiU2-38.40.42 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 12798032, updated on 6-May-2021

Summary

Official Symbol
scaRNA:PsiU2-38.40.42provided by FlyBase
Official Full Name
small Cajal body-specific RNA : PsiU2-38.40.42provided by FlyBase
Primary source
FLYBASE:FBgn0263474
Locus tag
Dmel_CR43589
Gene type
ncRNA
RNA name
snoRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR43589; Dmel\CR43589; pugU2-38/40/42; snoRNA:bur-a
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Genomic context

See scaRNA:PsiU2-38.40.42 in Genome Data Viewer
Location:
39B1-39B1; 2-54 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.32 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (21177040..21177176, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (21177040..21177176, complement)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Mitochondrial aconitase 1 Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR44911 Neighboring gene burgundy Neighboring gene Minichromosome maintenance 10 Neighboring gene Ret oncogene

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

  • scaRNA:PsiU2-38.40.42-RA; Dmel\scaRNA:PsiU2-38.40.42-RA; CR43589-RA; Dmel\CR43589-RA

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables snRNA pseudouridylation guide activity IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in Cajal body IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    21177040..21177176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_048031.2 RNA Sequence

    Status: REVIEWED

    Related
    FBtr0309773
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