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scaRNA:PsiU2-38.40.42 small Cajal body-specific RNA : PsiU2-38.40.42 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 12798032, updated on 29-Dec-2023

Summary

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Official Symbol
scaRNA:PsiU2-38.40.42provided by FlyBase
Official Full Name
small Cajal body-specific RNA : PsiU2-38.40.42provided by FlyBase
Primary source
FLYBASE:FBgn0263474
Locus tag
Dmel_CR43589
See related
AllianceGenome:FB:FBgn0263474
Gene type
ncRNA
RNA name
snoRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR43589; Dmel\CR43589; pugU2-38/40/42; snoRNA:bur-a
Summary
Enables snRNA pseudouridylation guide activity. Located in Cajal body. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
39B1-39B1; 2-54 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (21177040..21177176, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (21177040..21177176, complement)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Mitochondrial aconitase 1 Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR44911 Neighboring gene burgundy Neighboring gene Minichromosome maintenance 10 Neighboring gene Ret oncogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel small Cajal-body-specific RNAs identified in Drosophila: probing guide RNA function. Deryusheva S, et al. RNA, 2013 Dec. PMID 24149844, Free PMC Article
  2. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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  • scaRNA:PsiU2-38.40.42-RA; Dmel\scaRNA:PsiU2-38.40.42-RA; CR43589-RA; Dmel\CR43589-RA

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables snRNA pseudouridylation guide activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Cajal body IDA
Inferred from Direct Assay
more info
 PubMed 
located_in Cajal body IEA
Inferred from Electronic Annotation
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    21177040..21177176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_048031.2 RNA Sequence

    Status: REVIEWED

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases