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LOC128925296 CapStarr-seq enhancer MGSCv37_chr5:119128855-119129008 [ Mus musculus (house mouse) ]

Gene ID: 128925296, updated on 8-Feb-2024

Summary

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Gene symbol
LOC128925296
Gene description
CapStarr-seq enhancer MGSCv37_chr5:119128855-119129008
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr367926
Summary
This genomic region was identified as a candidate cis-regulatory module (CRM) in developing mouse thymocytes based on a combination of DNase I hypersensitivity and transcription factor binding. It was validated as an active enhancer by high-throughput CapStarr-seq reporter assays showing weak activity in NIH3T3 fibroblasts. [provided by RefSeq, Mar 2023]
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Genomic context

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See LOC128925296 in Genome Data Viewer
Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (118816911..118817064)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene basic transcription factor 3, pseudogene 11 Neighboring gene predicted gene, 46921 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:119020268-119020484 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:119040971-119041080 Neighboring gene mediator complex subunit 13-like Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:119126693-119126894 Neighboring gene STARR-seq mESC enhancer starr_14210 Neighboring gene predicted gene, 42015 Neighboring gene RIKEN cDNA 4930413E15 gene Neighboring gene STARR-seq mESC enhancer starr_14211

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq. Vanhille L, et al. Nat Commun, 2015 Apr 15. PMID 25872643

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • regulatory region 367926

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_151005.1 

    Range
    101..254
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    118816911..118817064
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version