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Crcp calcitonin gene-related peptide-receptor component protein [ Mus musculus (house mouse) ]

Gene ID: 12909, updated on 23-Jun-2021

Summary

Official Symbol
Crcpprovided by MGI
Official Full Name
calcitonin gene-related peptide-receptor component proteinprovided by MGI
Primary source
MGI:MGI:1100818
See related
Ensembl:ENSMUSG00000025532
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AL022669
Expression
Ubiquitous expression in testis adult (RPKM 19.8), CNS E18 (RPKM 14.2) and 28 other tissues See more
Orthologs
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Genomic context

See Crcp in Genome Data Viewer
Location:
5; 5 G1.3
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (130058147..130089628)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (130029306..130060787)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (130505176..130536657)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene argininosuccinate lyase Neighboring gene predicted gene, 40334 Neighboring gene predicted gene, 54305 Neighboring gene protein-tyrosine sulfotransferase 1 Neighboring gene potassium channel tetramerisation domain containing 7

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-directed 5'-3' RNA polymerase activity ISO
Inferred from Sequence Orthology
more info
 
enables calcitonin gene-related peptide receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of DNA polymerase III complex ISO
Inferred from Sequence Orthology
more info
 
part_of RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of RNA polymerase complex IEA
Inferred from Electronic Annotation
more info
 
located_in acrosomal vesicle IDA
Inferred from Direct Assay
more info
PubMed 
located_in axon ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in dendrite ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in neuronal cell body ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
DNA-directed RNA polymerase III subunit RPC9
Names
CGRP-RCP
CGRP-receptor component protein
CGRPRCP
RNA polymerase III subunit C9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007761.2NP_031787.1  DNA-directed RNA polymerase III subunit RPC9

    See identical proteins and their annotated locations for NP_031787.1

    Status: PROVISIONAL

    Source sequence(s)
    AC122339, AC161345
    Consensus CDS
    CCDS19706.1
    UniProtKB/Swiss-Prot
    O35427
    Related
    ENSMUSP00000026608.8, ENSMUST00000026608.11
    Conserved Domains (1) summary
    smart00657
    Location:1126
    RPOL4c; DNA-directed RNA-polymerase II subunit

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    130058147..130089628
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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