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Ddn dendrin [ Mus musculus (house mouse) ]

Gene ID: 13199, updated on 23-Jun-2021

Summary

Official Symbol
Ddnprovided by MGI
Official Full Name
dendrinprovided by MGI
Primary source
MGI:MGI:108101
See related
Ensembl:ENSMUSG00000059213
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm748
Expression
Biased expression in frontal lobe adult (RPKM 210.2) and cortex adult (RPKM 198.8) See more
Orthologs
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Genomic context

See Ddn in Genome Data Viewer
Location:
15 F1; 15 54.69 cM
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (98701663..98705806, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (98803782..98807925, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (98634213..98638356, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene wingless-type MMTV integration site family, member 10B Neighboring gene wingless-type MMTV integration site family, member 1 Neighboring gene protein kinase, AMP-activated, gamma 1 non-catalytic subunit Neighboring gene lysine (K)-specific methyltransferase 2D

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 
located_in cell projection ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in dendrite ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013741.1NP_001013763.1  dendrin

    See identical proteins and their annotated locations for NP_001013763.1

    Status: VALIDATED

    Source sequence(s)
    AK122363, AK158894
    Consensus CDS
    CCDS49723.1
    UniProtKB/Swiss-Prot
    Q80TS7
    Related
    ENSMUSP00000074895.7, ENSMUST00000075444.8
    Conserved Domains (1) summary
    pfam15498
    Location:55708
    Dendrin; Nephrin and CD2AP-binding protein, Dendrin

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    98701663..98705806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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