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C5orf49 chromosome 5 open reading frame 49 [ Homo sapiens (human) ]

Gene ID: 134121, updated on 11-Jun-2021

Summary

Official Symbol
C5orf49provided by HGNC
Official Full Name
chromosome 5 open reading frame 49provided by HGNC
Primary source
HGNC:HGNC:27028
See related
Ensembl:ENSG00000215217
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 8.1), lung (RPKM 2.5) and 5 other tissues See more
Orthologs
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Genomic context

See C5orf49 in Genome Data Viewer
Location:
5p15.31
Exon count:
4
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (7830378..7851133, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (7830491..7851246, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986403 Neighboring gene long intergenic non-protein coding RNA 2142 Neighboring gene uncharacterized LOC105374646 Neighboring gene adenylate cyclase 2 Neighboring gene FAST kinase domains 3 Neighboring gene 5-methyltetrahydrofolate-homocysteine methyltransferase reductase Neighboring gene semaphorin 5A pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
uncharacterized protein C5orf49

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089584.3NP_001083053.1  uncharacterized protein C5orf49

    See identical proteins and their annotated locations for NP_001083053.1

    Status: VALIDATED

    Source sequence(s)
    AC010346, BC062569
    Consensus CDS
    CCDS43300.1
    UniProtKB/Swiss-Prot
    A4QMS7
    Related
    ENSP00000382708.2, ENST00000399810.7
    Conserved Domains (1) summary
    pfam15074
    Location:42131
    DUF4541; Domain of unknown function (DUF4541)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    7830378..7851133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011513963.2XP_011512265.1  uncharacterized protein C5orf49 isoform X1

    Conserved Domains (1) summary
    pfam15074
    Location:1899
    DUF4541; Domain of unknown function (DUF4541)
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