Format

Send to:

Choose Destination

Sfxn1 sideroflexin 1 [ Mus musculus (house mouse) ]

Gene ID: 14057, updated on 6-May-2021

Summary

Official Symbol
Sfxn1provided by MGI
Official Full Name
sideroflexin 1provided by MGI
Primary source
MGI:MGI:2137677
See related
Ensembl:ENSMUSG00000021474
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
f; 2810002O05Rik; A930015P12Rik
Expression
Ubiquitous expression in kidney adult (RPKM 32.7), large intestine adult (RPKM 19.7) and 27 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Sfxn1 in Genome Data Viewer
Location:
13 B1; 13 28.4 cM
Exon count:
13
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (54225675..54262365)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (54071656..54108346)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (54167214..54203715)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34557 Neighboring gene dopamine receptor D1 Neighboring gene ribosomal protein, large, P0 pseudogene Neighboring gene predicted gene, 34640

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Spontaneous (1) 
  • Gene trapped (1) 
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables D-serine transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
enables L-serine transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
enables ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
enables serine transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in D-serine transport ISO
Inferred from Sequence Orthology
more info
 
involved_in L-serine transport ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within amino acid transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within erythrocyte differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in ion transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within iron ion transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within iron ion transport TAS
Traceable Author Statement
more info
PubMed 
involved_in mitochondrial transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of one-carbon metabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in serine import into mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in serine import into mitochondrion ISO
Inferred from Sequence Orthology
more info
 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
sideroflexin-1
Names
flexed tail

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027324.5NP_081600.1  sideroflexin-1

    See identical proteins and their annotated locations for NP_081600.1

    Status: VALIDATED

    Source sequence(s)
    AC163343, AK151110, CT030176
    Consensus CDS
    CCDS26525.1
    UniProtKB/Swiss-Prot
    Q99JR1
    Related
    ENSMUSP00000021930.9, ENSMUST00000021930.10
    Conserved Domains (1) summary
    pfam03820
    Location:16322
    Mtc; Tricarboxylate carrier

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    54225675..54262365
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006516849.5XP_006516912.2  sideroflexin-1 isoform X1

    See identical proteins and their annotated locations for XP_006516912.2

    UniProtKB/Swiss-Prot
    Q99JR1
    Conserved Domains (1) summary
    pfam03820
    Location:16322
    Mtc; Tricarboxylate carrier
  2. XM_006516850.5XP_006516913.1  sideroflexin-1 isoform X1

    See identical proteins and their annotated locations for XP_006516913.1

    UniProtKB/Swiss-Prot
    Q99JR1
    Conserved Domains (1) summary
    pfam03820
    Location:16322
    Mtc; Tricarboxylate carrier

RNA

  1. XR_003950425.1 RNA Sequence

  2. XR_004937937.1 RNA Sequence

  3. XR_003950424.2 RNA Sequence

  4. XR_004937936.1 RNA Sequence

  5. XR_004937939.1 RNA Sequence

  6. XR_004937938.1 RNA Sequence

Support Center