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CEP83-DT CEP83 divergent transcript [ Homo sapiens (human) ]

Gene ID: 144486, updated on 10-Oct-2023

Summary

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Official Symbol
CEP83-DTprovided by HGNC
Official Full Name
CEP83 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:27055
See related
Ensembl:ENSG00000278916 AllianceGenome:HGNC:27055
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CEP83-AS1; CCDC41-AS1
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Genomic context

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See CEP83-DT in Genome Data Viewer
Location:
12q22
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (94460003..94462570)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (94440813..94443380)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (94853779..94856346)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene centrosomal protein 83 Neighboring gene RNA, 7SL, cytoplasmic 330, pseudogene Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:94819773-94820337 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6783 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6784 Neighboring gene RNA binding motif single stranded interacting protein 2 pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:94849571-94849720 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6785 Neighboring gene uncharacterized LOC102724960 Neighboring gene NANOG hESC enhancer GRCh37_chr12:94915144-94915727 Neighboring gene RNA, 7SL, cytoplasmic 483, pseudogene Neighboring gene NSA2 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • CCDC41 antisense RNA 1 (head to head)
  • CEP83 antisense RNA 1 (head to head)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027035.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068779
    Related
    ENST00000623122.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    94460003..94462570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    94440813..94443380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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