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Gas5 growth arrest specific 5 [ Mus musculus (house mouse) ]

Gene ID: 14455, updated on 16-Oct-2021

Summary

Official Symbol
Gas5provided by MGI
Official Full Name
growth arrest specific 5provided by MGI
Primary source
MGI:MGI:95659
See related
Ensembl:ENSMUSG00000053332
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gas-5; Snhg2; Mir5117
Expression
Broad expression in liver E14 (RPKM 95.8), CNS E11.5 (RPKM 88.1) and 16 other tissues See more
Orthologs
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Genomic context

See Gas5 in Genome Data Viewer
Location:
1; 1 H2.1
Exon count:
13
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (160862171..160866109)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (161034601..161038539)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (162965297..162968668)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene RING CCCH (C3H) domains 1 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1 Neighboring gene zinc finger and BTB domain containing 37 Neighboring gene predicted gene, 26224 Neighboring gene predicted gene, 22489 Neighboring gene predicted gene, 22357 Neighboring gene predicted gene, 23212 Neighboring gene small nucleolar RNA, C/D box 78 Neighboring gene small nucleolar RNA, C/D box 80 Neighboring gene small nucleolar RNA, C/D box 47 Neighboring gene predicted gene, 25789 Neighboring gene aspartyl-tRNA synthetase 2 (mitochondrial) Neighboring gene centromere protein L

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Clone Names

  • MGC6251

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within response to bacterium IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_153812.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
    Related
    ENSMUST00000162558.8
  2. NR_153813.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
    Related
    ENSMUST00000159706.8
  3. NR_153814.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
  4. NR_153815.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
  5. NR_166050.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
    Related
    ENSMUST00000159663.8
  6. NR_166051.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
  7. NR_166052.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327
  8. NR_166055.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163327

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    160862171..160866109
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_013525.1: Suppressed sequence

    Description
    NM_013525.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
  2. NR_002840.2: Suppressed sequence

    Description
    NR_002840.2: This RefSeq was removed because it is primarily intronic sequence.
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