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lncRNA:CR43887 long non-coding RNA:CR43887 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 14462848, updated on 26-Apr-2024

Summary

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Official Symbol
lncRNA:CR43887provided by FlyBase
Official Full Name
long non-coding RNA:CR43887provided by FlyBase
Primary source
FLYBASE:FBgn0264479
Locus tag
Dmel_CR43887
See related
AllianceGenome:FB:FBgn0264479
Gene type
ncRNA
RNA name
lncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR43887; Dmel\CR43887; FBgn0264479
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Genomic context

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See lncRNA:CR43887 in Genome Data Viewer
Location:
68D2-68D2; 3-36 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (11693135..11693661)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (11686235..11686761)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Sugar baby Neighboring gene Pallidin Neighboring gene uncharacterized protein Neighboring gene Diphthamide biosynthesis 1 Neighboring gene dynein, axonemal, intermediate chain 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved noncoding transcription and core promoter regulatory code in early Drosophila development. Batut PJ, et al. Elife, 2017 Dec 20. PMID 29260710, Free PMC Article
  2. A global change in RNA polymerase II pausing during the Drosophila midblastula transition. Chen K, et al. Elife, 2013 Aug 13. PMID 23951546, Free PMC Article
  3. The Drosophila embryo at single-cell transcriptome resolution. Karaiskos N, et al. Science, 2017 Oct 13. PMID 28860209
  4. RNA-seq reveals post-transcriptional regulation of Drosophila insulin-like peptide dilp8 and the neuropeptide-like precursor Nplp2 by the exoribonuclease Pacman/XRN1. Jones CI, et al. Nucleic Acids Res, 2016 Jan 8. PMID 26656493, Free PMC Article
  5. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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  • lncRNA:CR43887-RA; Dmel\lncRNA:CR43887-RA; CR43887-RA; Dmel\CR43887-RA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    11693135..11693661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_073924.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.