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hop halorhodopsin [ Halobacterium salinarum NRC-1 ]

Gene ID: 1447103, updated on 31-Mar-2024

Summary

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Gene symbol
hop
Gene description
halorhodopsin
Locus tag
VNG_RS00745
Gene type
protein coding
Organism
Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922)
Lineage
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
Old locus tag
VNG0180G; VNG_0180G
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Genomic context

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Sequence:
NC_002607.1 (155681..156505, complement)

NC_002607.1Genomic Context describing neighboring genes Neighboring gene restriction endonuclease Neighboring gene RIO1 family regulatory kinase/ATPase Neighboring gene biotin/lipoate A/B protein ligase family protein Neighboring gene deoxyribonuclease IV

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002607.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystal structure of Halobacterium salinarum halorhodopsin with a partially depopulated primary chloride-binding site. Schreiner M, et al. Acta Crystallogr F Struct Biol Commun, 2016 Sep. PMID 27599860, Free PMC Article
  2. The halo-opsin gene. II. Sequence, primary structure of halorhodopsin and comparison with bacteriorhodopsin. Blanck A, et al. EMBO J, 1987 Jan. PMID 15981336, Free PMC Article
  3. Structure of the light-driven chloride pump halorhodopsin at 1.8 A resolution. Kolbe M, et al. Science, 2000 May 26. PMID 10827943
  4. Genome sequence of Halobacterium species NRC-1. Ng WV, et al. Proc Natl Acad Sci U S A, 2000 Oct 24. PMID 11016950, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Crystal structure of Halobacterium salinarum halorhodopsin with a partially depopulated primary chloride-binding site has been reported.
    Title: Crystal structure of Halobacterium salinarum halorhodopsin with a partially depopulated primary chloride-binding site.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
halorhodopsin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002607.1 Reference assembly

    Range
    155681..156505 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010902090.1 MULTISPECIES: halorhodopsin [Halobacterium]

    See identical proteins and their annotated locations for WP_010902090.1

    UniProtKB/Swiss-Prot
    B0R2U4, P0DMH7, P16102, Q9HSK9
    UniProtKB/TrEMBL
    A0A4D6GUF5, A0A510N5F9, A0A841HDY3, A0A895AA39
    Conserved Domains (1) summary
    cd15243
    Location:27 → 253
    7tm_Halorhodopsin; light-driven inward chloride pump halorhodopsin, member of the seven-transmembrane GPCR superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DMH7.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials