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L5 fiber [ Human mastadenovirus A ]

Gene ID: 1460847, updated on 15-Aug-2018

Summary

Gene symbol
L5
Gene description
fiber
Locus tag
HAdVAgp06
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Human mastadenovirus A (strain: Huie, serotype: Human adenovirus 12, acronym: HAdV-12, acronym: HAdV-A, nat-host: Homo sapiens, culture-collection: ATCC:VR-863, old-name: Human adenovirus A)
Lineage
Viruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus

Genomic context

Sequence:
NC_001460.1 (5771..31132)

NC_001460.1Genomic Context describing neighboring genes Neighboring gene control protein E1B 19K;control protein E1B 55K Neighboring gene encapsidation protein IVa2 Neighboring gene capsid protein IX Neighboring gene DNA polymerase;terminal protein precursor pTP Neighboring gene capsid protein precursor pIIIa;encapsidation protein 52K;protein 13.6K Neighboring gene core protein V;core protein precursor pVII;core protein precursor pX;penton base Neighboring gene capsid protein precursor pVI;hexon;protease Neighboring gene capsid protein precursor pVIII;encapsidation protein 22K;hexon assembly protein 100K;protein 33K Neighboring gene miscRNA Neighboring gene Neighboring gene single-stranded DNA-binding protein Neighboring gene control protein E3 12.5K;control protein E3 14.7K;membrane glycoprotein E3 CR1-alpha;membrane glycoprotein E3 CR1-beta;membrane protein E3 RID-alpha;membrane protein E3 RID-beta Neighboring gene protein U Neighboring gene control protein E4 34K;control protein E4orf1;control protein E4orf2;control protein E4orf3;control protein E4orf4;control protein E4orf6/7

General gene information

regulatory

  • Loc: 13323-13328 regulatory_class = polyA_signal_sequence
  • Loc: 16787-16792 regulatory_class = polyA_signal_sequence
  • Loc: 16792-16797 regulatory_class = polyA_signal_sequence
  • Loc: 21141-21146 regulatory_class = polyA_signal_sequence
  • Loc: 21167-21172 regulatory_class = polyA_signal_sequence
  • Loc: 25998-26003 regulatory_class = TATA_box
  • Loc: 29190-29195 regulatory_class = polyA_signal_sequence
  • Loc: 31127-31132 regulatory_class = polyA_signal_sequence
  • Loc: 5771-5776 regulatory_class = TATA_box

General protein information

Preferred Names
fiber
NP_040933.1
  • genus-common; fiber family

VOG classification

Description:

  • VOGd0022 [A] Fiber protein (virus attachment protein)
  • Auxilary Proteins

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001460.1 Reference assembly

    Range
    5771..31132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_040933.1 L5 gene product [Human mastadenovirus A]

    See identical proteins and their annotated locations for NP_040933.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P36711
    Conserved Domains (3) summary
    pfam00608
    Location:361390
    Adeno_shaft; Adenoviral fibre protein (repeat/shaft region)
    pfam00541
    Location:410583
    Adeno_knob; Adenoviral fibre protein (knob domain)
    pfam16939
    Location:281386
    Porin_6; Putative porin
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