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Gjb1 gap junction protein, beta 1 [ Mus musculus (house mouse) ]

Gene ID: 14618, updated on 11-Apr-2024

Summary

Official Symbol
Gjb1provided by MGI
Official Full Name
gap junction protein, beta 1provided by MGI
Primary source
MGI:MGI:95719
See related
Ensembl:ENSMUSG00000047797 AllianceGenome:MGI:95719
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cx32; Cxng; Cnx32; connexin-32
Summary
This gene is a member of the gap junction protein (connexin) family. The encoded protein is a component of gap junctions, which are composed of arrays of intercellular channels that provide a route for the diffusion of ions and small molecules between cells. Mutations in a similar gene in human cause X-linked Charcot-Marie-Tooth disease, an inherited peripheral neuropathy. Alternative splicing results in multiple transcript variants encoding the same protein. [provided by RefSeq, Oct 2014]
Expression
Biased expression in liver adult (RPKM 590.9), liver E18 (RPKM 193.1) and 7 other tissues See more
Orthologs
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Genomic context

Location:
X D; X 44.06 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (100419982..100429235)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (101376376..101385629)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene neuroligin 3 Neighboring gene STARR-positive B cell enhancer ABC_E4298 Neighboring gene predicted gene, 31385 Neighboring gene STARR-seq mESC enhancer starr_47649 Neighboring gene zinc finger, MYM-type 3 Neighboring gene STARR-positive B cell enhancer ABC_E7703 Neighboring gene non-POU-domain-containing, octamer binding protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (2) 

Pathways from PubChem

General gene information

Markers

Clone Names

  • MGC6217

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables gap junction channel activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables gap junction channel activity ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 
involved_in cell-cell signaling IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in purine ribonucleotide transport ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in anchoring junction IEA
Inferred from Electronic Annotation
more info
 
part_of connexin complex IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in gap junction IDA
Inferred from Direct Assay
more info
PubMed 
located_in gap junction ISO
Inferred from Sequence Orthology
more info
 
located_in lateral plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
gap junction beta-1 protein
Names
connexin 32
connexin g
connexin-43
gap junction membrane channel protein beta 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001302496.1NP_001289425.1  gap junction beta-1 protein

    See identical proteins and their annotated locations for NP_001289425.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All of the variants encode the same protein.
    Source sequence(s)
    AA423068, AI849881, AK134742, AL683892, BY087537
    Consensus CDS
    CCDS30314.1
    UniProtKB/Swiss-Prot
    P28230
    UniProtKB/TrEMBL
    A0A654IEJ3
    Related
    ENSMUSP00000113904.2, ENSMUST00000119080.8
    Conserved Domains (1) summary
    pfam00029
    Location:2214
    Connexin
  2. NM_001302497.1NP_001289426.1  gap junction beta-1 protein

    See identical proteins and their annotated locations for NP_001289426.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All of the variants encode the same protein.
    Source sequence(s)
    AA423068, AI849881, AK134742, AL683892, BE862747, BY087537
    Consensus CDS
    CCDS30314.1
    UniProtKB/Swiss-Prot
    P28230
    UniProtKB/TrEMBL
    A0A654IEJ3
    Related
    ENSMUSP00000113516.2, ENSMUST00000119190.2
    Conserved Domains (1) summary
    pfam00029
    Location:2214
    Connexin
  3. NM_001302498.1NP_001289427.1  gap junction beta-1 protein

    See identical proteins and their annotated locations for NP_001289427.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. All of the variants encode the same protein.
    Source sequence(s)
    AA423068, AI849881, AK134742, AL683892, BY087537, X84215
    Consensus CDS
    CCDS30314.1
    UniProtKB/Swiss-Prot
    P28230
    UniProtKB/TrEMBL
    A0A654IEJ3
    Conserved Domains (1) summary
    pfam00029
    Location:2214
    Connexin
  4. NM_008124.3NP_032150.2  gap junction beta-1 protein

    See identical proteins and their annotated locations for NP_032150.2

    Status: REVIEWED

    Source sequence(s)
    AA423068, AI849881, AK134742, AL683892, BY087537, BY105229
    Consensus CDS
    CCDS30314.1
    UniProtKB/Swiss-Prot
    P28230
    UniProtKB/TrEMBL
    A0A654IEJ3
    Related
    ENSMUSP00000062723.8, ENSMUST00000052130.14
    Conserved Domains (1) summary
    pfam00029
    Location:2214
    Connexin

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    100419982..100429235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030251227.2XP_030107087.1  gap junction beta-1 protein isoform X1

    UniProtKB/Swiss-Prot
    P28230
    UniProtKB/TrEMBL
    A0A654IEJ3
    Conserved Domains (1) summary
    pfam00029
    Location:2214
    Connexin