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Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano [ Mus musculus (house mouse) ]

Gene ID: 14910, updated on 16-Apr-2024

Summary

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Official Symbol
Gt(ROSA)26Sorprovided by MGI
Official Full Name
gene trap ROSA 26, Philippe Sorianoprovided by MGI
Primary source
MGI:MGI:104735
See related
Ensembl:ENSMUSG00000086429 AllianceGenome:MGI:104735
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
R26; ROSA26; Gtrgeo26; Gtrosa26; Thumpd3as1
Summary
This gene produces a long non-coding RNA (lncRNA) that is under the control of a constitutive promoter. This locus is a widely used site for the integration of transgenes and reporter constructs. [provided by RefSeq, Oct 2015]
Expression
Ubiquitous expression in bladder adult (RPKM 11.4), liver E14 (RPKM 10.6) and 25 other tissues See more
Orthologs
human all
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Genomic context

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See Gt(ROSA)26Sor in Genome Data Viewer
Location:
6 E3; 6 52.73 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (113044389..113054205, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (113067428..113077244, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4853 Neighboring gene predicted gene, 43868 Neighboring gene THUMP domain containing 3 Neighboring gene predicted gene, 22591 Neighboring gene STARR-seq mESC enhancer starr_17032 Neighboring gene STARR-seq mESC enhancer starr_17033 Neighboring gene SET domain containing 5 Neighboring gene lipoma HMGIC fusion partner-like protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Striatal cholinergic interneuron membrane voltage tracks locomotor rhythms in mice. Shroff SN, et al. Nat Commun, 2023 Jun 26. PMID 37365189, Free PMC Article
  2. Base editing-mediated one-step inactivation of the Dnmt gene family reveals critical roles of DNA methylation during mouse gastrulation. Li Q, et al. Nat Commun, 2023 May 22. PMID 37217538, Free PMC Article
  3. Developmental stage of transplanted neural progenitor cells influences anatomical and functional outcomes after spinal cord injury in mice. Aceves M, et al. Commun Biol, 2023 May 19. PMID 37208439, Free PMC Article
  4. Effects of retinoic acid receptor α modulators on developmental ethanol-induced neurodegeneration and neuroinflammation. Saito M, et al. Front Neurosci, 2023. PMID 37205047, Free PMC Article
  5. Efficient cancer modeling through CRISPR-Cas9/HDR-based somatic precision gene editing in mice. Bu W, et al. Sci Adv, 2023 May 12. PMID 37172086, Free PMC Article

See all (15780) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Endothelial TRPV4 channels in lung edema and injury.
    Title: Endothelial TRPV4 channels in lung edema and injury.
  2. Study shows SETD5-AS1 is highly expressed in the ischemia-reperfusion injury model. SETD5-AS1 participates in the development of ischemic stroke by activating PTEN and inhibiting PI3K/AKT pathway
    Title: SETD5-AS1 stimulates neuron death in stroke via promoting PTEN expression.
  3. Used a ROSA-flox-stop-flox-EYFP reporter mouse to assay the expression patterns of Cre recombinase side-by-side in thirteen myeloid-Cre strains by flow cytometry.
    Title: Comparative analysis of the efficiency and specificity of myeloid-Cre deleting strains using ROSA-EYFP reporter mice.
  4. When injected with tamoxifen, adult NEX-CreERT2 mice induced reporter gene expression exclusively in projection neurons of the neocortex and hippocampus.
    Title: In vivo imaging and noninvasive ablation of pyramidal neurons in adult NEX-CreERT2 mice.
  5. The endogenous Rosa26 promoter was silenced and several ubiquitous (pCAG, EF1alpha and CMV) and tissue-specific (VeCad, alphaSMA) promoters in the modRosa26 locus in vivo, characterized.
    Title: A modified RMCE-compatible Rosa26 locus for the expression of transgenes from exogenous promoters.
  6. Data show a dramatic discrepancy between ROSA26 reporter activity and Pdgfrb promoter driven Cre dependent myc-tagged Cthrc1 transgene expression.
    Title: Characterization of Pdgfrb-Cre transgenic mice reveals reduction of ROSA26 reporter activity in remodeling arteries.
  7. Results demonstrated that 70-75% of the fibroblasts generated from Dll1-msd Cre, ROSA26-rtTA embryos possess Cre recombinase activity.
    Title: Generation of transgenic mice expressing Cre recombinase under the control of the Dll1 mesoderm enhancer element.
  8. The ROSA26 LacZ-neo(R) insertion confers resistance to mammary tumors in Apc(Min/+) mice
    Title: The ROSA26 LacZ-neo(R) insertion confers resistance to mammary tumors in Apc(Min/+) mice.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Other Names

  • beta geo

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027008.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    BQ032740, BY207362, U83174
    Related
    ENSMUST00000124246.5

  2. NR_027009.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site near the 5' end, compared to variant 1.
    Source sequence(s)
    AC155722, BQ032740, BY207362
    Related
    ENSMUST00000159544.4

  3. NR_027010.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate 5' and 3' splice pattern, compared to variant 1.
    Source sequence(s)
    AK021028, BY207362, BY727583
    Related
    ENSMUST00000167415.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    113044389..113054205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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