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H19 H19, imprinted maternally expressed transcript [ Mus musculus (house mouse) ]

Gene ID: 14955, updated on 11-Apr-2024

Summary

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Official Symbol
H19provided by MGI
Official Full Name
H19, imprinted maternally expressed transcriptprovided by MGI
Primary source
MGI:MGI:95891
See related
Ensembl:ENSMUSG00000000031 AllianceGenome:MGI:95891
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EyeLinc6
Summary
Acts upstream of or within several processes, including negative regulation of cell population proliferation; negative regulation of gene expression; and regulation of nucleobase-containing compound metabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including extraembryonic component; eye; genitourinary system; heart; and musculature. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in liver E18 (RPKM 5536.3), placenta adult (RPKM 4196.2) and 5 other tissues See more
Orthologs
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Genomic context

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See H19 in Genome Data Viewer
Location:
7 F5; 7 87.97 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (142129267..142131883, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (142575530..142578146, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:149724284-149724471 Neighboring gene mitochondrial ribosomal protein L23 Neighboring gene H19/Igf2 enhancer region Neighboring gene non-coding transcript 1 Neighboring gene microRNA 675 Neighboring gene H19/Igf2 imprinting control region Neighboring gene predicted gene, 33148 Neighboring gene H19 upstream conserved region 2 Neighboring gene H19 upstream conserved region 1 Neighboring gene STARR-seq mESC enhancer starr_20515 Neighboring gene insulin-like growth factor 2 Neighboring gene microRNA 483

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. In vivo self-assembled small RNA targets H19 lncRNA for the treatment of colorectal cancer. Sun Y, et al. J Control Release, 2023 Jun. PMID 37068521
  2. LncRNA H19 Contributes to Smoke-Related Chronic Obstructive Pulmonary Disease by Targeting miR-181/PDCD4 Axis. Liu P, et al. COPD, 2023 Dec. PMID 36943093
  3. LncRNA H19 alleviates sepsis-induced acute lung injury by regulating the miR-107/TGFBR3 axis. Hao X, et al. BMC Pulm Med, 2022 Sep 30. PMID 36180862, Free PMC Article
  4. Long non-coding RNA H19 contributes to spinal cord ischemia/reperfusion injury through increasing neuronal pyroptosis by miR-181a-5p/HMGB1 axis. Guo L, et al. Aging (Albany NY), 2022 Jul 5. PMID 35793244, Free PMC Article
  5. LncRNA H19 inhibits oxidative stress injury of cochlear hair cells by regulating miR-653-5p/SIRT1 axis. Xie W, et al. Acta Biochim Biophys Sin (Shanghai), 2022 Mar 25. PMID 35538041, Free PMC Article

See all (461) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LncRNA H19 inhibition impairs endoplasmic reticulum-mitochondria contact in hepatic cells and augments gluconeogenesis by increasing VDAC1 levels.
    Title: LncRNA H19 inhibition impairs endoplasmic reticulum-mitochondria contact in hepatic cells and augments gluconeogenesis by increasing VDAC1 levels.
  2. The long noncoding RNA lnc-H19 is important for endurance exercise by maintaining slow muscle fiber types.
    Title: The long noncoding RNA lnc-H19 is important for endurance exercise by maintaining slow muscle fiber types.
  3. [Long noncoding RNA H19 promotes vascular calcification by repressing the Bax inhibitor 1/optic atrophy 1 pathway].
    Title: [Long noncoding RNA H19 promotes vascular calcification by repressing the Bax inhibitor 1/optic atrophy 1 pathway].
  4. H19/Mir-130b-3p/Cyp4a14 potentiate the effect of praziquantel on liver in the treatment of Schistosoma japonicum infection.
    Title: H19/Mir-130b-3p/Cyp4a14 potentiate the effect of praziquantel on liver in the treatment of Schistosoma japonicum infection.
  5. Five nucleotides found in RCTG motifs are essential for post-fertilization methylation imprinting of the H19 ICR in YAC transgenic mice.
    Title: Five nucleotides found in RCTG motifs are essential for post-fertilization methylation imprinting of the H19 ICR in YAC transgenic mice.
  6. Decreased expression of H19/miR-675 ameliorates muscle atrophy by regulating the IGF1R/Akt/FoxO signaling pathway.
    Title: Decreased expression of H19/miR-675 ameliorates muscle atrophy by regulating the IGF1R/Akt/FoxO signaling pathway.
  7. In vivo self-assembled small RNA targets H19 lncRNA for the treatment of colorectal cancer.
    Title: In vivo self-assembled small RNA targets H19 lncRNA for the treatment of colorectal cancer.
  8. The Long Noncoding RNA H19 Promotes Fibrotic Processes in Lens Epithelial Cells.
    Title: The Long Noncoding RNA H19 Promotes Fibrotic Processes in Lens Epithelial Cells.
  9. Possible transfer of lncRNA H19-derived miRNA miR-675-3p to adjacent H19-non-expressing trophoblast cells in near-term mouse placenta.
    Title: Possible transfer of lncRNA H19-derived miRNA miR-675-3p to adjacent H19-non-expressing trophoblast cells in near-term mouse placenta.
  10. LncRNA H19 Contributes to Smoke-Related Chronic Obstructive Pulmonary Disease by Targeting miR-181/PDCD4 Axis.
    Title: LncRNA H19 Contributes to Smoke-Related Chronic Obstructive Pulmonary Disease by Targeting miR-181/PDCD4 Axis.
Submit: New GeneRIF Correction See all GeneRIFs (169)

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Other Names

  • H19 fetal liver mRNA

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of cell population proliferation IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within genomic imprinting IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within negative regulation of cell population proliferation IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within negative regulation of gene expression IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within negative regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within negative regulation of multicellular organism growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of gene expression IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within regulation of multicellular organism growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISA
Inferred from Sequence Alignment
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130973.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK145379, BY770825, W75219
    Related
    ENSMUST00000136359.10

  2. NR_130974.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in an internal exon, compared to variant 1.
    Source sequence(s)
    AK145379, BY770825, CV561038, W75219
    Related
    ENSMUST00000152754.10

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    142129267..142131883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_023123.1: Suppressed sequence

    Description
    NM_023123.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.

  2. NR_001592.1: Suppressed sequence

    Description
    NR_001592.1: This RefSeq was permanently suppressed because the transcript retains intronic sequences.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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