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Klrd1 killer cell lectin-like receptor, subfamily D, member 1 [ Mus musculus (house mouse) ]

Gene ID: 16643, updated on 6-May-2021

Summary

Official Symbol
Klrd1provided by MGI
Official Full Name
killer cell lectin-like receptor, subfamily D, member 1provided by MGI
Primary source
MGI:MGI:1196275
See related
Ensembl:ENSMUSG00000030165
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CD94
Expression
Low expression observed in reference dataset See more
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Genomic context

See Klrd1 in Genome Data Viewer
Location:
6 F3; 6 63.42 cM
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (129565055..129575738)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (129588092..129598775)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (129543508..129548671)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700101I11 gene Neighboring gene gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1 Neighboring gene killer cell lectin-like receptor family E member 1 Neighboring gene killer cell lectin-like receptor subfamily K, member 1 Neighboring gene killer cell lectin-like receptor subfamily C, member 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables HLA-E specific inhibitory MHC class Ib receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables MHC class I protein complex binding ISO
Inferred from Sequence Orthology
more info
 
enables MHC class Ib protein binding, via antigen binding groove ISO
Inferred from Sequence Orthology
more info
 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
enables protein antigen binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in external side of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
part_of receptor complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
natural killer cells antigen CD94

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010654.4NP_034784.1  natural killer cells antigen CD94

    See identical proteins and their annotated locations for NP_034784.1

    Status: VALIDATED

    Source sequence(s)
    AK136548, AK162976
    Consensus CDS
    CCDS57456.1
    UniProtKB/Swiss-Prot
    O54707
    Related
    ENSMUSP00000107694.3, ENSMUST00000112063.9
    Conserved Domains (1) summary
    cd03593
    Location:61176
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    129565055..129575738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006505655.3XP_006505718.1  natural killer cells antigen CD94 isoform X1

    See identical proteins and their annotated locations for XP_006505718.1

    UniProtKB/Swiss-Prot
    O54707
    Conserved Domains (1) summary
    cd03593
    Location:61176
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
  2. XM_006505656.1XP_006505719.1  natural killer cells antigen CD94 isoform X2

    Conserved Domains (2) summary
    cd03593
    Location:52153
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    pfam08391
    Location:941
    Ly49; Ly49-like protein, N-terminal region
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