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Hpcal4 hippocalcin-like 4 [ Mus musculus (house mouse) ]

Gene ID: 170638, updated on 23-Jun-2021

Summary

Official Symbol
Hpcal4provided by MGI
Official Full Name
hippocalcin-like 4provided by MGI
Primary source
MGI:MGI:2157521
See related
Ensembl:ENSMUSG00000046093
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
NVP-2; AI846570
Expression
Biased expression in frontal lobe adult (RPKM 155.7), cortex adult (RPKM 149.3) and 1 other tissue See more
Orthologs
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Genomic context

See Hpcal4 in Genome Data Viewer
Location:
4; 4 D2.2
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (123077297..123088492)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (123183504..123194699)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (122860747..122871942)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein 8b Neighboring gene 3-oxoacid CoA transferase 2B Neighboring gene peptidylprolyl isomerase E (cyclophilin E) Neighboring gene 5'-nucleotidase, cytosolic IA Neighboring gene hairy/enhancer-of-split related with YRPW motif-like

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables calcium channel regulator activity ISO
Inferred from Sequence Orthology
more info
 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein C-terminus binding ISO
Inferred from Sequence Orthology
more info
 
enables protein domain specific binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
hippocalcin-like protein 4
Names
neural visinin-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_174998.4NP_778163.1  hippocalcin-like protein 4

    See identical proteins and their annotated locations for NP_778163.1

    Status: PROVISIONAL

    Source sequence(s)
    AL606934
    Consensus CDS
    CCDS18611.1
    UniProtKB/Swiss-Prot
    Q8BGZ1
    UniProtKB/TrEMBL
    B2RRY8
    Related
    ENSMUSP00000051487.3, ENSMUST00000059667.9
    Conserved Domains (1) summary
    COG5126
    Location:13181
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    123077297..123088492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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