Format

Send to:

Choose Destination

Ly6d lymphocyte antigen 6 complex, locus D [ Mus musculus (house mouse) ]

Gene ID: 17068, updated on 23-Jun-2021

Summary

Official Symbol
Ly6dprovided by MGI
Official Full Name
lymphocyte antigen 6 complex, locus Dprovided by MGI
Primary source
MGI:MGI:96881
See related
Ensembl:ENSMUSG00000034634
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ly6; Thb; Ly-6; Ly61; Ly-61
Expression
Biased expression in bladder adult (RPKM 542.7), spleen adult (RPKM 533.1) and 8 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Ly6d in Genome Data Viewer
Location:
15 D3; 15 34.27 cM
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (74633905..74635416, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (74762056..74763567, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (74592486..74593997, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene secreted Ly6/Plaur domain containing 2 Neighboring gene Ly6/neurotoxin 1 Neighboring gene lymphocyte antigen 6 complex, locus G6G Neighboring gene predicted gene, 33174

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in lymphocyte differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within lymphocyte differentiation IEP
Inferred from Expression Pattern
more info
PubMed 
acts_upstream_of_or_within response to stilbenoid IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
located_in anchored component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in cell surface IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cell surface IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
lymphocyte antigen 6D
Names
ly-6D
thymocyte B-cell antigen

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010742.1NP_034872.1  lymphocyte antigen 6D precursor

    See identical proteins and their annotated locations for NP_034872.1

    Status: PROVISIONAL

    Source sequence(s)
    X63782
    Consensus CDS
    CCDS27531.1
    UniProtKB/Swiss-Prot
    P35459
    Related
    ENSMUSP00000047419.7, ENSMUST00000040404.8
    Conserved Domains (1) summary
    smart00134
    Location:2199
    LU; Ly-6 antigen / uPA receptor -like domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    74633905..74635416 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center