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Ly75 lymphocyte antigen 75 [ Mus musculus (house mouse) ]

Gene ID: 17076, updated on 20-Jul-2021

Summary

Official Symbol
Ly75provided by MGI
Official Full Name
lymphocyte antigen 75provided by MGI
Primary source
MGI:MGI:106662
See related
Ensembl:ENSMUSG00000026980
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CD205; DEC205; DEC-205
Expression
Broad expression in thymus adult (RPKM 6.5), placenta adult (RPKM 5.6) and 16 other tissues See more
Orthologs
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Genomic context

See Ly75 in Genome Data Viewer
Location:
2; 2 C1.1
Exon count:
35
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (60122447..60213617, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (60292103..60383273, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (60131817..60221288, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene bromodomain adjacent to zinc finger domain, 2B Neighboring gene membrane associated ring-CH-type finger 7 Neighboring gene ribosomal protein L10A, pseudogene 4 Neighboring gene CD302 antigen Neighboring gene predicted gene 13571 Neighboring gene predicted gene 13580 Neighboring gene phospholipase A2 receptor 1 Neighboring gene predicted gene 13583

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
enables signaling receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within endocytosis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in external side of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
lymphocyte antigen 75
Names
ly-75

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013825.4NP_038853.2  lymphocyte antigen 75 precursor

    See identical proteins and their annotated locations for NP_038853.2

    Status: VALIDATED

    Source sequence(s)
    AL935326
    Consensus CDS
    CCDS38126.1
    UniProtKB/Swiss-Prot
    Q60767
    Related
    ENSMUSP00000028362.9, ENSMUST00000028362.9
    Conserved Domains (5) summary
    smart00059
    Location:162209
    FN2; Fibronectin type 2 domain
    cd00037
    Location:14071514
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    smart00034
    Location:216341
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    smart00458
    Location:38125
    RICIN; Ricin-type beta-trefoil
    cd00161
    Location:40125
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    60122447..60213617 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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