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Vgll1 vestigial like family member 1 [ Mus musculus (house mouse) ]

Gene ID: 170828, updated on 20-Jul-2021

Summary

Official Symbol
Vgll1provided by MGI
Official Full Name
vestigial like family member 1provided by MGI
Primary source
MGI:MGI:2655768
See related
Ensembl:ENSMUSG00000031131
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ton; Tondu
Expression
Biased expression in placenta adult (RPKM 2.1), bladder adult (RPKM 0.1) and 1 other tissue See more
Orthologs
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Genomic context

See Vgll1 in Genome Data Viewer
Location:
X; X A6
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (56133466..56151900)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (57088106..57106540)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (54341283..54358623)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene bombesin-like receptor 3 Neighboring gene HIV TAT specific factor 1 Neighboring gene predicted gene 14718 Neighboring gene CD40 ligand

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein C-terminus binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
transcription cofactor vestigial-like protein 1
Names
vestigial like 1 homolog
vestigial-related factor
vgl-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001313763.1NP_001300692.1  transcription cofactor vestigial-like protein 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants encode the same protein.
    Source sequence(s)
    AL672128
    Consensus CDS
    CCDS30151.1
    UniProtKB/Swiss-Prot
    Q99NC0
    Related
    ENSMUSP00000110393.3, ENSMUST00000114745.9
    Conserved Domains (1) summary
    pfam07545
    Location:2151
    Vg_Tdu; Vestigial/Tondu family
  2. NM_133251.2NP_573514.1  transcription cofactor vestigial-like protein 1

    See identical proteins and their annotated locations for NP_573514.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants encode the same protein.
    Source sequence(s)
    AL672128
    Consensus CDS
    CCDS30151.1
    UniProtKB/Swiss-Prot
    Q99NC0
    Related
    ENSMUSP00000033465.4, ENSMUST00000033465.10
    Conserved Domains (1) summary
    pfam07545
    Location:2151
    Vg_Tdu; Vestigial/Tondu family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    56133466..56151900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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