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lmn-1 Lamin-1 [ Caenorhabditis elegans ]

Gene ID: 172687, updated on 6-Jul-2021

Summary

Gene symbol
lmn-1
Gene description
Lamin-1
Primary source
WormBase:WBGene00003052
Locus tag
CELE_DY3.2
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See lmn-1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
6
Sequence:
Chromosome: I; NC_003279.8 (8763041..8765631)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Mitochondrial import inner membrane translocase subunit tim-13 Neighboring gene BHLH domain-containing protein Neighboring gene Telomerase reverse transcriptase Neighboring gene Glutaredoxin domain-containing protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables histone binding IDA
Inferred from Direct Assay
more info
PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables structural molecule activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 
located_in lamin filament ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear envelope IDA
Inferred from Direct Assay
more info
PubMed 
located_in nuclear envelope IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear periphery IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Lamin-1
NP_492371.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    8763041..8765631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059970.7NP_492371.1  Lamin-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492371.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q21443
    Conserved Domains (3) summary
    pfam00038
    Location:44386
    Filament; Intermediate filament protein
    pfam00932
    Location:443547
    LTD; Lamin Tail Domain
    cl19511
    Location:57147
    DUF2317; Uncharacterized protein conserved in bacteria (DUF2317)
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