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rpc-25 RNA Polymerase, Class III (C) [ Caenorhabditis elegans ]

Gene ID: 179418, updated on 6-Jul-2021

Summary

Gene symbol
rpc-25
Gene description
RNA Polymerase, Class III (C)
Primary source
WormBase:WBGene00014111
Locus tag
CELE_ZK856.10
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See rpc-25 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (10205680..10206602, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene putative RNA-binding protein EIF1AD Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene Transcription Factor ThreeC subunit (GTF3C homolog) Neighboring gene HIT-type domain-containing protein

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

  • Homologs of the rpc-25 gene: The rpc-25 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, A.thaliana, rice, and frog.
  • Orthologs

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in transcription initiation from RNA polymerase III promoter IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
RNA Polymerase, Class III (C)
NP_505625.1
  • Product from WormBase gene class rpc;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    10205680..10206602 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073224.5NP_505625.1  RNA Polymerase, Class III (C) [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_505625.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q23645
    Conserved Domains (3) summary
    COG1095
    Location:1194
    RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
    cd04330
    Location:281
    RNAP_III_Rpc25_N; RNAP_III_Rpc25_N: Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, ...
    pfam08292
    Location:79194
    RNA_pol_Rbc25; RNA polymerase III subunit Rpc25
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