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Rrp1 ribosomal RNA processing 1 [ Mus musculus (house mouse) ]

Gene ID: 18114, updated on 23-Jun-2021

Summary

Official Symbol
Rrp1provided by MGI
Official Full Name
ribosomal RNA processing 1provided by MGI
Primary source
MGI:MGI:1203500
See related
Ensembl:ENSMUSG00000061032
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
N; NN; Nnp1; NNP-1; AL033305; AL033306; AU018604
Expression
Ubiquitous expression in testis adult (RPKM 117.2), frontal lobe adult (RPKM 80.6) and 28 other tissues See more
Orthologs
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Genomic context

See Rrp1 in Genome Data Viewer
Location:
10 C1; 10 39.72 cM
Exon count:
13
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (78236196..78248877, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (78400362..78413043, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (77863107..77875788, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40709 Neighboring gene LSM7 homolog, U6 small nuclear RNA associated pseudogene Neighboring gene microRNA 6907 Neighboring gene cystatin B Neighboring gene microRNA 6410

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in rRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in chromosome ISO
Inferred from Sequence Orthology
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of preribosome, large subunit precursor IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ribosomal RNA processing protein 1 homolog A
Names
RRP1-like protein
novel nuclear protein 1
nucleolar protein Nop52
protein NNP-1
ribosomal RNA processing 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010925.2NP_035055.2  ribosomal RNA processing protein 1 homolog A

    See identical proteins and their annotated locations for NP_035055.2

    Status: VALIDATED

    Source sequence(s)
    BC065993, BY106122, BY616845
    Consensus CDS
    CCDS35961.1
    UniProtKB/Swiss-Prot
    P56183
    Related
    ENSMUSP00000058785.10, ENSMUST00000062678.11
    Conserved Domains (1) summary
    pfam05997
    Location:11218
    Nop52; Nucleolar protein,Nop52

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    78236196..78248877 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006513338.4XP_006513401.1  ribosomal RNA processing protein 1 homolog A isoform X1

    See identical proteins and their annotated locations for XP_006513401.1

    Conserved Domains (2) summary
    pfam05997
    Location:1156
    Nop52; Nucleolar protein,Nop52
    cl30717
    Location:299424
    InfB; Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]
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