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C14H10.3 Pyridoxal-dependent decarboxylase domain-containing protein 1 [ Caenorhabditis elegans ]

Gene ID: 181232, updated on 11-Apr-2024

Summary

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Gene symbol
C14H10.3
Gene description
Pyridoxal-dependent decarboxylase domain-containing protein 1
Primary source
WormBase:WBGene00007593
Locus tag
CELE_C14H10.3
See related
AllianceGenome:WB:WBGene00007593
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable catalytic activity. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to human PDXDC1 (pyridoxal dependent decarboxylase domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: X
Exon count:
13
Sequence:
Chromosome: X; NC_003284.9 (10220641..10228137, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene FBA_2 domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Zrt (ZRT), Irt- (IRT-) like Protein Transporter

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in intracellular membrane-bounded organelle IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Pyridoxal-dependent decarboxylase domain-containing protein 1
NP_001123108.1
  • Confirmed by transcript evidence
NP_001379485.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    10220641..10228137 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001129636.8 → NP_001123108.1  Pyridoxal-dependent decarboxylase domain-containing protein 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001123108.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B1Q254
    Conserved Domains (1) summary
    cl18945
    Location:206 → 434
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  2. NM_001392833.1 → NP_001379485.1  Pyridoxal-dependent decarboxylase domain-containing protein 1 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    B1Q255
    Conserved Domains (1) summary
    cl18945
    Location:138 → 366
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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