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Peg3 paternally expressed 3 [ Mus musculus (house mouse) ]

Gene ID: 18616, updated on 20-Jul-2021

Summary

Official Symbol
Peg3provided by MGI
Official Full Name
paternally expressed 3provided by MGI
Primary source
MGI:MGI:104748
See related
Ensembl:ENSMUSG00000002265
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pw; End; Gca; Pw1; End4; ASF-1; Gcap4; Zfp10; Zfp102; AL022617; mKIAA0287
Expression
Biased expression in placenta adult (RPKM 77.8), limb E14.5 (RPKM 49.2) and 12 other tissues See more
Orthologs
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Genomic context

See Peg3 in Genome Data Viewer
Location:
7 A1; 7 3.89 cM
Exon count:
13
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (6706891..6733443, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (6703892..6730462, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (6658671..6683130, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger, imprinted 2 Neighboring gene zinc finger, imprinted 1 Neighboring gene Peg3 opposite strand Neighboring gene ubiquitin specific peptidase 29 Neighboring gene Tctex1 domain containing 2 pseudogene Neighboring gene microRNA 3099

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in autophagosome IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
paternally-expressed gene 3 protein
Names
granule cell antiserum positive 4
paternally expressed gene 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008817.2NP_032843.2  paternally-expressed gene 3 protein

    See identical proteins and their annotated locations for NP_032843.2

    Status: VALIDATED

    Source sequence(s)
    AB003040, AK044602, CAAA01104351
    Consensus CDS
    CCDS20783.1
    UniProtKB/Swiss-Prot
    Q3URU2
    Related
    ENSMUSP00000050750.5, ENSMUST00000051209.11
    Conserved Domains (3) summary
    PHA03169
    Location:8621080
    PHA03169; hypothetical protein; Provisional
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:11471169
    zf-C2H2; Zinc finger, C2H2 type

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    6706891..6733443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030242211.2XP_030098071.1  paternally-expressed gene 3 protein isoform X3

    Conserved Domains (3) summary
    PHA03169
    Location:8621080
    PHA03169; hypothetical protein; Provisional
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:11471169
    zf-C2H2; Zinc finger, C2H2 type
  2. XM_017322033.3XP_017177522.1  paternally-expressed gene 3 protein isoform X4

    Conserved Domains (3) summary
    PHA03169
    Location:718936
    PHA03169; hypothetical protein; Provisional
    sd00017
    Location:183203
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:10031025
    zf-C2H2; Zinc finger, C2H2 type
  3. XM_017322030.3XP_017177519.1  paternally-expressed gene 3 protein isoform X2

    Conserved Domains (3) summary
    PHA03169
    Location:9431151
    PHA03169; hypothetical protein; Provisional
    sd00017
    Location:408428
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:12181240
    zf-C2H2; Zinc finger, C2H2 type
  4. XM_017322029.3XP_017177518.1  paternally-expressed gene 3 protein isoform X1

    Conserved Domains (3) summary
    PHA03169
    Location:9431161
    PHA03169; hypothetical protein; Provisional
    sd00017
    Location:408428
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:12281250
    zf-C2H2; Zinc finger, C2H2 type
  5. XM_036152771.1XP_036008664.1  paternally-expressed gene 3 protein isoform X3

    Conserved Domains (3) summary
    PHA03169
    Location:8621080
    PHA03169; hypothetical protein; Provisional
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:11471169
    zf-C2H2; Zinc finger, C2H2 type
  6. XM_036152776.1XP_036008669.1  paternally-expressed gene 3 protein isoform X4

    Conserved Domains (3) summary
    PHA03169
    Location:718936
    PHA03169; hypothetical protein; Provisional
    sd00017
    Location:183203
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:10031025
    zf-C2H2; Zinc finger, C2H2 type
  7. XM_036152772.1XP_036008665.1  paternally-expressed gene 3 protein isoform X3

    Conserved Domains (3) summary
    PHA03169
    Location:8621080
    PHA03169; hypothetical protein; Provisional
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:11471169
    zf-C2H2; Zinc finger, C2H2 type
  8. XM_030242212.1XP_030098072.1  paternally-expressed gene 3 protein isoform X3

    Conserved Domains (3) summary
    PHA03169
    Location:8621080
    PHA03169; hypothetical protein; Provisional
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:11471169
    zf-C2H2; Zinc finger, C2H2 type
  9. XM_036152774.1XP_036008667.1  paternally-expressed gene 3 protein isoform X3

    Conserved Domains (3) summary
    PHA03169
    Location:8621080
    PHA03169; hypothetical protein; Provisional
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:11471169
    zf-C2H2; Zinc finger, C2H2 type
  10. XM_036152773.1XP_036008666.1  paternally-expressed gene 3 protein isoform X3

    Conserved Domains (3) summary
    PHA03169
    Location:8621080
    PHA03169; hypothetical protein; Provisional
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:11471169
    zf-C2H2; Zinc finger, C2H2 type
  11. XM_036152775.1XP_036008668.1  paternally-expressed gene 3 protein isoform X3

    Conserved Domains (3) summary
    PHA03169
    Location:8621080
    PHA03169; hypothetical protein; Provisional
    sd00017
    Location:327347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:11471169
    zf-C2H2; Zinc finger, C2H2 type

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001010988.1: Suppressed sequence

    Description
    NM_001010988.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
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