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Pou2af1 POU domain, class 2, associating factor 1 [ Mus musculus (house mouse) ]

Gene ID: 18985, updated on 23-Jun-2021

Summary

Official Symbol
Pou2af1provided by MGI
Official Full Name
POU domain, class 2, associating factor 1provided by MGI
Primary source
MGI:MGI:105086
See related
Ensembl:ENSMUSG00000032053
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
OC; Bob; OCA; BOB.; Bob-; Bob1; OBF-; OBF.; OCAB; BOB.1; Bob-1; OBF-1; OBF.1; OCA-B
Expression
Biased expression in spleen adult (RPKM 91.2), mammary gland adult (RPKM 18.2) and 6 other tissues See more
Orthologs
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Genomic context

See Pou2af1 in Genome Data Viewer
Location:
9; 9 A5.3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (51124990..51151379)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (51213690..51240079)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (51021795..51048184)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene HOATZ cilia and flagella associated protein Neighboring gene microRNA 34b Neighboring gene BTG anti-proliferation factor 4 Neighboring gene predicted gene, 32742 Neighboring gene RIKEN cDNA 1810046K07 gene Neighboring gene predicted gene, 32819 Neighboring gene COLCA2 homolog Neighboring gene predicted gene, 39338

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables transcription coactivator activity IDA
Inferred from Direct Assay
more info
PubMed 
enables transcription coactivator activity ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of RNA polymerase II transcription regulator complex ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
POU domain class 2-associating factor 1
Names
B-cell-specific coactivator OBF-1
OCT-binding factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011136.2NP_035266.1  POU domain class 2-associating factor 1

    See identical proteins and their annotated locations for NP_035266.1

    Status: PROVISIONAL

    Source sequence(s)
    AC160052
    Consensus CDS
    CCDS23176.1
    UniProtKB/Swiss-Prot
    Q64693
    UniProtKB/TrEMBL
    Q542H4
    Related
    ENSMUSP00000034554.8, ENSMUST00000034554.9
    Conserved Domains (1) summary
    pfam09310
    Location:7255
    PD-C2-AF1; POU domain, class 2, associating factor 1

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    51124990..51151379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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