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Scml1 Scm polycomb group protein like 1 [ Mus musculus (house mouse) ]

Gene ID: 195726, updated on 5-Mar-2024

Summary

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Official Symbol
Scml1provided by MGI
Official Full Name
Scm polycomb group protein like 1provided by MGI
Primary source
MGI:MGI:2684893
See related
Ensembl:ENSMUSG00000121874 AllianceGenome:MGI:2684893
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm47; Gm1792
Expression
Restricted expression toward testis adult (RPKM 4.8) See more
Orthologs
human all
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Genomic context

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See Scml1 in Genome Data Viewer
Location:
X F4; X 74.15 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (160597689..160615118, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (161814693..161832122, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial pseudogene Neighboring gene STARR-seq mESC enhancer starr_48196 Neighboring gene STARR-seq mESC enhancer starr_48197 Neighboring gene retinoic acid induced 2 Neighboring gene NHS actin remodeling regulator Neighboring gene STARR-seq mESC enhancer starr_48200 Neighboring gene STARR-seq mESC enhancer starr_48202 Neighboring gene predicted gene, 26317 Neighboring gene predicted gene, 23794

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The enigmatic meiotic dense body and its newly discovered component, SCML1, are dispensable for fertility and gametogenesis in mice. Papanikos F, et al. Chromosoma, 2017 Jun. PMID 27165042, Free PMC Article
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in female germ cell nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in male germ cell nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
sex comb on midleg-like protein 1
Names
Vsex comb on midleg-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374204.1 → NP_001361133.1  sex comb on midleg-like protein 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL732391
    Related
    ENSMUST00000136860.3
    Conserved Domains (2) summary
    NF033902
    Location:135 → 276
    iso_D2_wall_anc; SpaH/EbpB family LPXTG-anchored major pilin
    cl15755
    Location:427 → 495
    SAM_superfamily; SAM (Sterile alpha motif )

  2. NM_001374205.1 → NP_001361134.1  sex comb on midleg-like protein 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL732391
    Conserved Domains (2) summary
    NF033902
    Location:135 → 276
    iso_D2_wall_anc; SpaH/EbpB family LPXTG-anchored major pilin
    cl15755
    Location:427 → 495
    SAM_superfamily; SAM (Sterile alpha motif )

  3. NM_001374206.1 → NP_001361135.1  sex comb on midleg-like protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL732391
    Conserved Domains (1) summary
    NF033902
    Location:135 → 276
    iso_D2_wall_anc; SpaH/EbpB family LPXTG-anchored major pilin

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    160597689..160615118 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036161863.1 → XP_036017756.1  sex comb on midleg-like protein 1 isoform X1

    Conserved Domains (2) summary
    NF033902
    Location:135 → 276
    iso_D2_wall_anc; SpaH/EbpB family LPXTG-anchored major pilin
    cl15755
    Location:427 → 495
    SAM_superfamily; SAM (Sterile alpha motif )
Nucleotide Protein Strain
Heading Accession and Version

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