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Rdh16 retinol dehydrogenase 16 [ Mus musculus (house mouse) ]

Gene ID: 19683, updated on 23-Jun-2021

Summary

Official Symbol
Rdh16provided by MGI
Official Full Name
retinol dehydrogenase 16provided by MGI
Primary source
MGI:MGI:1201375
See related
Ensembl:ENSMUSG00000069456
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CRA; Rdh; CRAD; Rdh6; CRAD1
Expression
Biased expression in kidney adult (RPKM 24.2), liver adult (RPKM 21.9) and 4 other tissues See more
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Genomic context

See Rdh16 in Genome Data Viewer
Location:
10; 10 D3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (127636959..127651715)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (127801090..127815846)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (127238209..127252895)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene retinol dehydrogenase 1 (all trans) Neighboring gene retinol dehydrogenase 9 Neighboring gene retinol dehydrogenase 18, pseudogene Neighboring gene retinol dehydrogenase 19

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Homology

Clone Names

  • MGC107668

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables NAD-retinol dehydrogenase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables androstan-3-alpha,17-beta-diol dehydrogenase activity ISO
Inferred from Sequence Orthology
more info
 
enables androsterone dehydrogenase activity ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding IDA
Inferred from Direct Assay
more info
PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
located_in endoplasmic reticulum lumen IDA
Inferred from Direct Assay
more info
PubMed 
located_in endoplasmic reticulum membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in endoplasmic reticulum membrane ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of organelle membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of organelle membrane ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
retinol dehydrogenase 16
Names
cis-retinol/androgen dehydrogenase 1
retinol dehydrogenase 6
retinol dehydrogenase type 6
NP_033066.1
XP_006513452.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009040.3NP_033066.1  retinol dehydrogenase 16

    See identical proteins and their annotated locations for NP_033066.1

    Status: VALIDATED

    Source sequence(s)
    AC131690, AF030513, AK149404, BY144003
    Consensus CDS
    CCDS24252.1
    UniProtKB/TrEMBL
    O54909
    Related
    ENSMUSP00000071573.2, ENSMUST00000071646.2
    Conserved Domains (1) summary
    cd09805
    Location:30306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    127636959..127651715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006513389.3XP_006513452.1  retinol dehydrogenase 16 isoform X1

    See identical proteins and their annotated locations for XP_006513452.1

    UniProtKB/TrEMBL
    O54909
    Conserved Domains (1) summary
    cd09805
    Location:30306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
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