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Rpl30 ribosomal protein L30 [ Mus musculus (house mouse) ]

Gene ID: 19946, updated on 5-Sep-2021

Summary

Official Symbol
Rpl30provided by MGI
Official Full Name
ribosomal protein L30provided by MGI
Primary source
MGI:MGI:98037
See related
Ensembl:ENSMUSG00000058600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in bladder adult (RPKM 355.7), liver E14 (RPKM 337.8) and 24 other tissues See more
Orthologs
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Genomic context

See Rpl30 in Genome Data Viewer
Location:
15 B3.1; 15 14.33 cM
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (34440651..34443422, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (34440505..34443276, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (34370260..34373031, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene lysosomal-associated protein transmembrane 4B Neighboring gene eukaryotic translation initiation factor 4A2 pseudogene Neighboring gene matrilin 2 Neighboring gene RIKEN cDNA 9430069I07 gene Neighboring gene predicted gene, 24523 Neighboring gene glutamate rich 5 Neighboring gene reactive intermediate imine deaminase A homolog

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC106425, MGC107559

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables selenocysteine insertion sequence binding ISO
Inferred from Sequence Orthology
more info
 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytosol TAS
Traceable Author Statement
more info
 
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in polysomal ribosome ISO
Inferred from Sequence Orthology
more info
 
located_in postsynaptic density EXP
Inferred from Experiment
more info
PubMed 
is_active_in postsynaptic density IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in postsynaptic density ISO
Inferred from Sequence Orthology
more info
 
located_in ribosome ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163485.1NP_001156957.1  60S ribosomal protein L30

    See identical proteins and their annotated locations for NP_001156957.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks sequence in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    BC086891, BC100608, BG370645
    Consensus CDS
    CCDS37057.1
    UniProtKB/Swiss-Prot
    P62889
    UniProtKB/TrEMBL
    Q497D7, Q58DZ3, Q5PR15
    Related
    ENSMUSP00000106014.2, ENSMUST00000079735.12
    Conserved Domains (1) summary
    PTZ00106
    Location:2107
    PTZ00106; 60S ribosomal protein L30; Provisional
  2. NM_009083.4NP_033109.1  60S ribosomal protein L30

    See identical proteins and their annotated locations for NP_033109.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK002988, CJ048578, CO806526
    Consensus CDS
    CCDS37057.1
    UniProtKB/Swiss-Prot
    P62889
    UniProtKB/TrEMBL
    Q58DZ3
    Related
    ENSMUSP00000009039.6, ENSMUST00000009039.6
    Conserved Domains (1) summary
    PTZ00106
    Location:2107
    PTZ00106; 60S ribosomal protein L30; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    34440651..34443422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_001450.1: Suppressed sequence

    Description
    NG_001450.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
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