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Rps3a1 ribosomal protein S3A1 [ Mus musculus (house mouse) ]

Gene ID: 20091, updated on 8-Jul-2021

Summary

Official Symbol
Rps3a1provided by MGI
Official Full Name
ribosomal protein S3A1provided by MGI
Primary source
MGI:MGI:1202063
See related
Ensembl:ENSMUSG00000028081
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
R; Rps3a
Expression
Broad expression in CNS E11.5 (RPKM 670.7), bladder adult (RPKM 656.5) and 23 other tissues See more
Orthologs
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Genomic context

See Rps3a1 in Genome Data Viewer
Location:
3; 3 F1
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (86045247..86049975, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (86137940..86142668, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (85941862..85946590, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene SH3 domain protein D19 Neighboring gene protease, serine 48 Neighboring gene predicted gene, 25188 Neighboring gene small nucleolar RNA, C/D box U73A Neighboring gene small nucleolar RNA, C/D box U73B Neighboring gene predicted gene, 23025 Neighboring gene LPS-responsive beige-like anchor Neighboring gene predicted gene, 26343

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC102469, MGC117914

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables mRNA 5'-UTR binding ISO
Inferred from Sequence Orthology
more info
 
enables mRNA binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
enables translation initiation factor binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of fibroblast proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of translation ISO
Inferred from Sequence Orthology
more info
 
involved_in translation ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
 
part_of cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
part_of ribonucleoprotein complex ISO
Inferred from Sequence Orthology
more info
PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 
part_of small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
is_active_in synapse EXP
Inferred from Experiment
more info
PubMed 
located_in synapse IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
40S ribosomal protein S3a
Names
ribosomal protein S3A
NP_058655.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016959.4NP_058655.3  40S ribosomal protein S3a

    See identical proteins and their annotated locations for NP_058655.3

    Status: VALIDATED

    Source sequence(s)
    AI845448, AK167562, AL118161
    Consensus CDS
    CCDS17446.1
    UniProtKB/Swiss-Prot
    P97351
    UniProtKB/TrEMBL
    Q564F3
    Related
    ENSMUSP00000029722.7, ENSMUST00000029722.7
    Conserved Domains (1) summary
    pfam01015
    Location:21221
    Ribosomal_S3Ae; Ribosomal S3Ae family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    86045247..86049975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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