TIGIT T cell immunoreceptor with Ig and ITIM domains [Homo sapiens (human)] - Gene

Summary

Official Symbol: TIGITprovided by HGNC
Official Full Name: T cell immunoreceptor with Ig and ITIM domainsprovided by HGNC
Primary source: HGNC:HGNC:26838
See related: Ensembl:ENSG00000181847 MIM:612859; AllianceGenome:HGNC:26838
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: VSIG9; VSTM3; WUCAM
Summary: This gene encodes a member of the PVR (poliovirus receptor) family of immunoglobin proteins. The product of this gene is expressed on several classes of T cells including follicular B helper T cells (TFH). The protein has been shown to bind PVR with high affinity; this binding is thought to assist interactions between TFH and dendritic cells to regulate T cell dependent B cell responses.[provided by RefSeq, Sep 2009]
Expression: Biased expression in lymph node (RPKM 15.1), spleen (RPKM 5.9) and 7 other tissues See more
Orthologs: mouse all
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Genomic context

Location:: 3q13.31

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	3	NC_000003.12 (114294028..114310288)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	3	NC_060927.1 (117011991..117031081)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	3	NC_000003.11 (114012875..114029135)

Chromosome 3 - NC_000003.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Ectopic Expression of TIGIT in Lung Adenocarcinoma and Its Clinical Significance.
Title: Ectopic Expression of TIGIT in Lung Adenocarcinoma and Its Clinical Significance.
LAG3 and TIGIT Expression on Tumor-Infiltrating Lymphocytes in Cutaneous Melanoma.
Title: LAG3 and TIGIT Expression on Tumor-Infiltrating Lymphocytes in Cutaneous Melanoma.
The immune checkpoint TIGIT/CD155 promotes the exhaustion of CD8 + T cells in TNBC through glucose metabolic reprogramming mediated by PI3K/AKT/mTOR signaling.
Title: The immune checkpoint TIGIT/CD155 promotes the exhaustion of CD8 + T cells in TNBC through glucose metabolic reprogramming mediated by PI3K/AKT/mTOR signaling.
Decreased expression of TIGIT on CD14 + monocytes correlates with clinical features and laboratory parameters of patients with primary Sjogren's syndrome.
Title: Decreased expression of TIGIT on CD14 + monocytes correlates with clinical features and laboratory parameters of patients with primary Sjögren's syndrome.
[Expression and effect of TIGIT in peripheral blood CD56[+] T cells of patients with rheumatoid arthritis].
Title: [Expression and effect of TIGIT in peripheral blood CD56(+) T cells of patients with rheumatoid arthritis].
IL-21 collaborates with anti-TIGIT to restore NK cell function in chronic HBV infection.
Title: IL-21 collaborates with anti-TIGIT to restore NK cell function in chronic HBV infection.
CD155 and Its Receptors as Targets for Cancer Therapy.
Title: CD155 and Its Receptors as Targets for Cancer Therapy.
TIGIT can inhibit T cell activation via ligation-induced nanoclusters, independent of CD226 co-stimulation.
Title: TIGIT can inhibit T cell activation via ligation-induced nanoclusters, independent of CD226 co-stimulation.
[Application of TIGIT combined with interleukin-6 detection in the evaluation of Crohn's disease status].
Title: [Application of TIGIT combined with interleukin-6 detection in the evaluation of Crohn's disease status].
Clinical significance of the expression of FOXP3 and TIGIT in Merkel cell carcinoma.
Title: Clinical significance of the expression of FOXP3 and TIGIT in Merkel cell carcinoma.

Submit: New GeneRIF Correction See all GeneRIFs (120)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables identical protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables signaling receptor binding	IBA Inferred from Biological aspect of Ancestor more info
enables signaling receptor binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in negative regulation of T cell activation	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within negative regulation of T cell activation	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of T cell activation	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in negative regulation of interleukin-12 production	IBA Inferred from Biological aspect of Ancestor more info
involved_in negative regulation of interleukin-12 production	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of interleukin-10 production	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of interleukin-10 production	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
is_active_in cell surface	IBA Inferred from Biological aspect of Ancestor more info
located_in cell surface	IDA Inferred from Direct Assay more info	PubMed
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: T-cell immunoreceptor with Ig and ITIM domains

Names: V-set and immunoglobulin domain containing 9; V-set and immunoglobulin domain-containing protein 9; V-set and transmembrane domain containing 3; V-set and transmembrane domain-containing protein 3; VSIG9, VSTM3; Washington University cell adhesion molecule

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_173799.4 → NP_776160.2 T-cell immunoreceptor with Ig and ITIM domains precursor

See identical proteins and their annotated locations for NP_776160.2

Status: VALIDATED

Source sequence(s)

AC093010, BC101289, BX640915, EU675310

Consensus CDS

CCDS2980.1

UniProtKB/Swiss-Prot

Q495A1, Q495A3, Q5JPD8, Q6MZS2, Q8N877

Related

ENSP00000373167.3, ENST00000383671.8

Conserved Domains (2) summary

cd00096
Location:40 → 47

Ig; Ig strand B [structural motif]

cl11960
Location:38 → 126

Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

NC_000003.12 Reference GRCh38.p14 Primary Assembly

Range

114294028..114310288

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_047447671.1 → XP_047303627.1 T-cell immunoreceptor with Ig and ITIM domains isoform X1
XM_047447672.1 → XP_047303628.1 T-cell immunoreceptor with Ig and ITIM domains isoform X2

Alternate T2T-CHM13v2.0

Genomic

NC_060927.1 Alternate T2T-CHM13v2.0

Range

117011991..117031081

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054345653.1 → XP_054201628.1 T-cell immunoreceptor with Ig and ITIM domains isoform X3

UniProtKB/Swiss-Prot

Q495A1, Q495A3, Q5JPD8, Q6MZS2, Q8N877
XM_054345652.1 → XP_054201627.1 T-cell immunoreceptor with Ig and ITIM domains isoform X1
XM_054345654.1 → XP_054201629.1 T-cell immunoreceptor with Ig and ITIM domains isoform X2