Format

Send to:

Choose Destination

Stmn2 stathmin-like 2 [ Mus musculus (house mouse) ]

Gene ID: 20257, updated on 23-Jun-2021

Summary

Official Symbol
Stmn2provided by MGI
Official Full Name
stathmin-like 2provided by MGI
Primary source
MGI:MGI:98241
See related
Ensembl:ENSMUSG00000027500
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SCG1; Scgn; SCG10; Stmb2; Scgn10; AI159727
Expression
Biased expression in CNS E18 (RPKM 490.1), whole brain E14.5 (RPKM 244.1) and 5 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Stmn2 in Genome Data Viewer
Location:
3 A1; 3 2.15 cM
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (8574587..8626664)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (8509527..8561604)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (8509527..8561604)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 189 pseudogene Neighboring gene predicted gene, 41993 Neighboring gene predicted gene, 18822 Neighboring gene predicted gene, 32496

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables calcium-dependent protein binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables tubulin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 
is_active_in growth cone IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in growth cone IDA
Inferred from Direct Assay
more info
PubMed 
located_in growth cone ISO
Inferred from Sequence Orthology
more info
 
located_in lamellipodium ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in neuron projection IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in neuron projection ISO
Inferred from Sequence Orthology
more info
 
located_in neuronal cell body ISO
Inferred from Sequence Orthology
more info
 
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in vesicle ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
stathmin-2
Names
superior cervical ganglion-10 protein
superiorcervical ganglia, neural specific 10

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025285.2NP_079561.1  stathmin-2

    See identical proteins and their annotated locations for NP_079561.1

    Status: PROVISIONAL

    Source sequence(s)
    AC124554
    Consensus CDS
    CCDS17231.1
    UniProtKB/Swiss-Prot
    P55821
    UniProtKB/TrEMBL
    Q545S4
    Related
    ENSMUSP00000029002.8, ENSMUST00000029002.9
    Conserved Domains (1) summary
    pfam00836
    Location:39174
    Stathmin; Stathmin family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    8574587..8626664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center