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Zfp106 zinc finger protein 106 [ Mus musculus (house mouse) ]

Gene ID: 20402, updated on 2-Oct-2021

Summary

Official Symbol
Zfp106provided by MGI
Official Full Name
zinc finger protein 106provided by MGI
Primary source
MGI:MGI:1270153
See related
Ensembl:ENSMUSG00000027288
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
H3; H3a; Cd-1; Sh3b; sirm; Sh3bp3; Znf106; D2Dcr28; zfp-106; EyeLinc12
Expression
Ubiquitous expression in heart adult (RPKM 47.5), frontal lobe adult (RPKM 16.8) and 28 other tissues See more
Orthologs
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Genomic context

See Zfp106 in Genome Data Viewer
Location:
2 E5; 2 60.37 cM
Exon count:
22
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (120337301..120394367, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (120506820..120563864, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (120332566..120389567, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A Neighboring gene glucosidase, alpha; neutral C Neighboring gene RIKEN cDNA 4931402G19 gene Neighboring gene calpain 3 Neighboring gene synaptosomal-associated protein 23 Neighboring gene leucine rich repeat containing 57 Neighboring gene HAUS augmin-like complex, subunit 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables SH3 domain binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables SH3 domain binding IDA
Inferred from Direct Assay
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables opioid peptide activity IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in insulin receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within insulin receptor signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger protein 106
Names
H3a minor histocompatibility antigen
SH3-domain binding protein 3
zinc finger protein 474

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011743.3NP_035873.2  zinc finger protein 106

    Status: VALIDATED

    Source sequence(s)
    AL772299, AL935121
    Consensus CDS
    CCDS16621.1
    UniProtKB/TrEMBL
    R4GML0
    Related
    ENSMUSP00000055602.7, ENSMUST00000055241.13
    Conserved Domains (4) summary
    cd00200
    Location:15301807
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00020
    Location:729
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05109
    Location:530681
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00039
    Location:15801619
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    120337301..120394367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006499044.5XP_006499107.1  zinc finger protein 106 isoform X3

    Conserved Domains (2) summary
    cd00200
    Location:7411018
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:791830
    7WD40; WD40 repeat [structural motif]
  2. XM_006499042.5XP_006499105.1  zinc finger protein 106 isoform X2

    Conserved Domains (3) summary
    cd00200
    Location:14641741
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam05109
    Location:464615
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00039
    Location:15141553
    7WD40; WD40 repeat [structural motif]
  3. XM_030248878.2XP_030104738.1  zinc finger protein 106 isoform X1

    Conserved Domains (4) summary
    cd00200
    Location:15301807
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00020
    Location:729
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam05109
    Location:530681
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00039
    Location:15801619
    7WD40; WD40 repeat [structural motif]
  4. XM_030248880.1XP_030104740.1  zinc finger protein 106 isoform X3

    Conserved Domains (2) summary
    cd00200
    Location:7411018
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:791830
    7WD40; WD40 repeat [structural motif]
  5. XM_036159870.1XP_036015763.1  zinc finger protein 106 isoform X4

    Conserved Domains (2) summary
    cd00200
    Location:314591
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:364403
    7WD40; WD40 repeat [structural motif]

RNA

  1. XR_004939180.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_009165.1: Suppressed sequence

    Description
    NM_009165.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
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