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Slc31a1 solute carrier family 31, member 1 [ Mus musculus (house mouse) ]

Gene ID: 20529, updated on 22-Aug-2021

Summary

Official Symbol
Slc31a1provided by MGI
Official Full Name
solute carrier family 31, member 1provided by MGI
Primary source
MGI:MGI:1333843
See related
Ensembl:ENSMUSG00000066150
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ctr; Ctr1; AI787263; AU016967; 4930445G01Rik
Expression
Ubiquitous expression in liver adult (RPKM 31.6), large intestine adult (RPKM 31.4) and 28 other tissues See more
Orthologs
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Genomic context

See Slc31a1 in Genome Data Viewer
Location:
4; 4 B3
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (62278821..62310006)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (62360583..62391769)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (62021735..62052803)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 23148 Neighboring gene solute carrier family 31, member 2 Neighboring gene FK506 binding protein 15 Neighboring gene cell division cycle 26 Neighboring gene pre-mRNA processing factor 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables copper ion transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables copper ion transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables copper ion transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in cellular copper ion homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within cellular copper ion homeostasis IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in cellular response to cisplatin ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within copper ion import IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in copper ion import ISO
Inferred from Sequence Orthology
more info
 
involved_in copper ion import across plasma membrane ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within copper ion transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within ion transport IEA
Inferred from Electronic Annotation
more info
 
involved_in transmembrane transport ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in late endosome IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in neuronal cell body ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in recycling endosome IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
high affinity copper uptake protein 1
Names
copper transporter 1
solute carrier family 13 (sodium/sulphate symporters), member 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175090.4NP_780299.2  high affinity copper uptake protein 1

    See identical proteins and their annotated locations for NP_780299.2

    Status: VALIDATED

    Source sequence(s)
    BC058227, BC065147, BY097629
    Consensus CDS
    CCDS18237.1
    UniProtKB/Swiss-Prot
    Q8K211
    Related
    ENSMUSP00000081574.6, ENSMUST00000084526.12
    Conserved Domains (1) summary
    pfam04145
    Location:51181
    Ctr; Ctr copper transporter family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    62278821..62310006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006537711.4XP_006537774.1  high affinity copper uptake protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006537774.1

    UniProtKB/Swiss-Prot
    Q8K211
    Conserved Domains (1) summary
    pfam04145
    Location:51181
    Ctr; Ctr copper transporter family
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