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Snx30 sorting nexin family member 30 [ Mus musculus (house mouse) ]

Gene ID: 209131, updated on 23-Jun-2021

Summary

Official Symbol
Snx30provided by MGI
Official Full Name
sorting nexin family member 30provided by MGI
Primary source
MGI:MGI:2443882
See related
Ensembl:ENSMUSG00000028385
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4732481H14Rik; C030041J06Rik
Expression
Ubiquitous expression in cerebellum adult (RPKM 5.4), placenta adult (RPKM 4.7) and 24 other tissues See more
Orthologs
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Genomic context

See Snx30 in Genome Data Viewer
Location:
4; 4 B3
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (59805137..59904740)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (59805131..59904740)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (59818522..59917612)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA E130308A19 gene Neighboring gene predicted gene, 54283 Neighboring gene INTS3 and NABP interacting protein Neighboring gene sorting nexin 2 pseudogene Neighboring gene solute carrier family 46, member 2 Neighboring gene major urinary protein 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC106086

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
sorting nexin-30
Names
novel PX domain containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172468.2NP_766056.1  sorting nexin-30

    See identical proteins and their annotated locations for NP_766056.1

    Status: VALIDATED

    Source sequence(s)
    AK147437, AL831738, BB645079
    Consensus CDS
    CCDS18226.1
    UniProtKB/Swiss-Prot
    Q8CE50
    Related
    ENSMUSP00000030080.7, ENSMUST00000030080.7
    Conserved Domains (2) summary
    cd06860
    Location:91206
    PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
    cd07667
    Location:190429
    BAR_SNX30; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    59805137..59904740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006537724.3XP_006537787.1  sorting nexin-30 isoform X1

    See identical proteins and their annotated locations for XP_006537787.1

    Conserved Domains (2) summary
    cd06860
    Location:1102
    PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
    cl12013
    Location:86325
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
  2. XM_006537725.5XP_006537788.1  sorting nexin-30 isoform X1

    See identical proteins and their annotated locations for XP_006537788.1

    Conserved Domains (2) summary
    cd06860
    Location:1102
    PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
    cl12013
    Location:86325
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
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