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Cstdc3 cystatin domain containing 3 [ Mus musculus (house mouse) ]

Gene ID: 209324, updated on 23-Jun-2021

Summary

Official Symbol
Cstdc3provided by MGI
Official Full Name
cystatin domain containing 3provided by MGI
Primary source
MGI:MGI:3648404
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm4758; EG209324; Stfna3l1
Expression
Restricted expression toward testis adult (RPKM 1.8) See more
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Genomic context

See Cstdc3 in Genome Data Viewer
Location:
16; 16 B3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (36125719..36133079)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (36305357..36312717)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (36308125..36312739)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 24569 Neighboring gene stefin A1 Neighboring gene predicted gene, 24437 Neighboring gene cystatin domain containing 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
cystatin-A; stefin-3
Names
stefin A3 like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    36125719..36133079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_156070.2XP_156070.1  stefin-3

    See identical proteins and their annotated locations for XP_156070.1

    Conserved Domains (1) summary
    pfam00031
    Location:592
    Cystatin; Cystatin domain

RNA

  1. XR_876058.1 RNA Sequence

  2. XR_876057.1 RNA Sequence

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