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Prrt3 proline-rich transmembrane protein 3 [ Mus musculus (house mouse) ]

Gene ID: 210673, updated on 23-Jun-2021

Summary

Official Symbol
Prrt3provided by MGI
Official Full Name
proline-rich transmembrane protein 3provided by MGI
Primary source
MGI:MGI:2444810
See related
Ensembl:ENSMUSG00000045009
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6330505P20; B230206N24Rik
Expression
Biased expression in cortex adult (RPKM 8.5), cerebellum adult (RPKM 8.3) and 6 other tissues See more
Orthologs
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Genomic context

See Prrt3 in Genome Data Viewer
Location:
6; 6 E3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (113470599..113479071, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (113493638..113502082, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (113444089..113451812, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene interleukin 17 receptor C Neighboring gene cysteine-rich with EGF-like domains 1 Neighboring gene ER membrane protein complex subunit 3 Neighboring gene Fanconi anemia, complementation group D2 Neighboring gene predicted gene, 46971

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
proline-rich transmembrane protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289699.1NP_001276628.1  proline-rich transmembrane protein 3 isoform a precursor

    See identical proteins and their annotated locations for NP_001276628.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1 and 2 encode the same isoform (a).
    Source sequence(s)
    AC153910, AK031947, AK136854
    Consensus CDS
    CCDS85122.1
    UniProtKB/TrEMBL
    A0A0N4SVB5
    Related
    ENSMUSP00000145443.2, ENSMUST00000204268.3
    Conserved Domains (1) summary
    PHA03247
    Location:64464
    PHA03247; large tegument protein UL36; Provisional
  2. NM_001289700.1NP_001276629.1  proline-rich transmembrane protein 3 isoform a precursor

    See identical proteins and their annotated locations for NP_001276629.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same isoform (a).
    Source sequence(s)
    AC153910, AK031947, AK136854, BC058349
    Consensus CDS
    CCDS85122.1
    UniProtKB/Swiss-Prot
    Q6PE13
    UniProtKB/TrEMBL
    A0A0N4SVB5
    Related
    ENSMUSP00000145031.2, ENSMUST00000204134.3
    Conserved Domains (1) summary
    PHA03247
    Location:64464
    PHA03247; large tegument protein UL36; Provisional
  3. NM_172487.4NP_766075.2  proline-rich transmembrane protein 3 isoform b precursor

    See identical proteins and their annotated locations for NP_766075.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate in-frame splice site, compared to variant 1. The encoded isoform (b) is shorter than isoform 1.
    Source sequence(s)
    AC153910, AK136854, BC058349
    Consensus CDS
    CCDS20424.1
    UniProtKB/Swiss-Prot
    Q6PE13
    Related
    ENSMUSP00000098620.2, ENSMUST00000101059.4
    Conserved Domains (2) summary
    PHA03247
    Location:64463
    PHA03247; large tegument protein UL36; Provisional
    PRK07764
    Location:273447
    PRK07764; DNA polymerase III subunits gamma and tau; Validated

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    113470599..113479071 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030255299.2XP_030111159.1  proline-rich transmembrane protein 3 isoform X2

    Conserved Domains (2) summary
    PHA03247
    Location:64463
    PHA03247; large tegument protein UL36; Provisional
    PRK07764
    Location:273447
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
  2. XM_006505843.5XP_006505906.1  proline-rich transmembrane protein 3 isoform X2

    See identical proteins and their annotated locations for XP_006505906.1

    UniProtKB/Swiss-Prot
    Q6PE13
    Conserved Domains (2) summary
    PHA03247
    Location:64463
    PHA03247; large tegument protein UL36; Provisional
    PRK07764
    Location:273447
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
  3. XM_011241275.2XP_011239577.1  proline-rich transmembrane protein 3 isoform X1

    See identical proteins and their annotated locations for XP_011239577.1

    UniProtKB/TrEMBL
    A0A0N4SVB5
    Conserved Domains (1) summary
    PHA03247
    Location:64464
    PHA03247; large tegument protein UL36; Provisional
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