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BC016579 cDNA sequence, BC016579 [ Mus musculus (house mouse) ]

Gene ID: 212998, updated on 3-Apr-2024

Summary

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Official Symbol
BC016579provided by MGI
Official Full Name
cDNA sequence, BC016579provided by MGI
Primary source
MGI:MGI:2384848
See related
Ensembl:ENSMUSG00000033187 AllianceGenome:MGI:2384848
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Orthologous to human C3orf52 (chromosome 3 open reading frame 52). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in colon adult (RPKM 1.6), large intestine adult (RPKM 0.8) and 9 other tissues See more
Orthologs
human all
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Genomic context

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Location:
16 B5; 16 29.76 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (45447211..45476215, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (45626848..45655852, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1 Neighboring gene germinal center associated, signaling and motility Neighboring gene transmembrane serine protease 7 Neighboring gene STARR-seq mESC enhancer starr_40918 Neighboring gene STARR-seq mESC enhancer starr_40919 Neighboring gene transgelin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Clone Names

  • MGC27720

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
TPA-induced transmembrane protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427036.1 → NP_001413965.1  TPA-induced transmembrane protein homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC124636, AC166572

  2. NM_145389.3 → NP_663364.2  TPA-induced transmembrane protein homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC124636, AC166572
    Consensus CDS
    CCDS49862.1
    UniProtKB/Swiss-Prot
    Q8C5C9, Q91YJ8
    UniProtKB/TrEMBL
    E9QP50
    Related
    ENSMUSP00000037651.8, ENSMUST00000036732.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    45447211..45476215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006521974.3 → XP_006522037.1  TPA-induced transmembrane protein homolog isoform X3

  2. XM_036159868.1 → XP_036015761.1  TPA-induced transmembrane protein homolog isoform X4

  3. XM_036159867.1 → XP_036015760.1  TPA-induced transmembrane protein homolog isoform X2

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8C5C9.1 GenPept UniProtKB/Swiss-Prot:Q8C5C9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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