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Zfp879 zinc finger protein 879 [ Mus musculus (house mouse) ]

Gene ID: 214779, updated on 23-Jun-2021

Summary

Official Symbol
Zfp879provided by MGI
Official Full Name
zinc finger protein 879provided by MGI
Primary source
MGI:MGI:3053099
See related
Ensembl:ENSMUSG00000044296
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Znf879
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See Zfp879 in Genome Data Viewer
Location:
11; 11 B1.3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (50719821..50732414, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (50828994..50841587, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (50645537..50655054, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2 Neighboring gene predicted gene, 51860 Neighboring gene zinc finger protein 354C Neighboring gene glutamate receptor, metabotropic 6 Neighboring gene zinc finger protein 454

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Homology

Clone Names

  • 9630041N07Rik

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger protein 879
Names
novel zinc finger protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290779.1NP_001277708.1  zinc finger protein 879 isoform 2

    See identical proteins and their annotated locations for NP_001277708.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in its 5' UTR, lacks part of the 5' coding region, and uses a downstream start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AK036152, BC118537, BF457823
    Consensus CDS
    CCDS70178.1
    UniProtKB/Swiss-Prot
    Q8BI99
    UniProtKB/TrEMBL
    Q147Z4
    Related
    ENSMUSP00000104761.2, ENSMUST00000109133.2
    Conserved Domains (3) summary
    COG5048
    Location:132485
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:301321
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:453478
    zf-H2C2_2; Zinc-finger double domain
  2. NM_173387.3NP_775563.1  zinc finger protein 879 isoform 1

    See identical proteins and their annotated locations for NP_775563.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK036152, BF457823
    Consensus CDS
    CCDS24638.1
    UniProtKB/Swiss-Prot
    Q8BI99
    Related
    ENSMUSP00000061782.2, ENSMUST00000049625.2
    Conserved Domains (6) summary
    smart00349
    Location:1470
    KRAB; krueppel associated box
    COG5048
    Location:205558
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:374394
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:204226
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:1453
    KRAB; KRAB box
    pfam13465
    Location:526551
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    50719821..50732414 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030245779.1XP_030101639.1  zinc finger protein 879 isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:1470
    KRAB; krueppel associated box
    COG5048
    Location:201554
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:370390
    ZF_C2H2; C2H2 Zn finger [structural motif]
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