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Ckap4 cytoskeleton-associated protein 4 [ Mus musculus (house mouse) ]

Gene ID: 216197, updated on 25-Nov-2021

Summary

Official Symbol
Ckap4provided by MGI
Official Full Name
cytoskeleton-associated protein 4provided by MGI
Primary source
MGI:MGI:2444926
See related
Ensembl:ENSMUSG00000046841
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
P63; CLIMP-63; 5630400A09Rik
Expression
Broad expression in ovary adult (RPKM 52.9), limb E14.5 (RPKM 52.2) and 27 other tissues See more
Orthologs
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Genomic context

See Ckap4 in Genome Data Viewer
Location:
10; 10 C1
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (84362169..84369752, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (84526305..84533888, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (83989050..83996633, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930463O16 gene Neighboring gene predicted gene, 34405 Neighboring gene transcription factor E3 pseudogene Neighboring gene pluripotency associated transcript 7 Neighboring gene predicted gene, 34515

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cell surface ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasmic ribonucleoprotein granule ISO
Inferred from Sequence Orthology
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in lipid droplet ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear speck ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in rough endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in rough endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
cytoskeleton-associated protein 4
Names
63 kDa membrane protein
63-kDa cytoskeleton-linking membrane protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175451.1NP_780660.1  cytoskeleton-associated protein 4

    See identical proteins and their annotated locations for NP_780660.1

    Status: VALIDATED

    Source sequence(s)
    AK030708, BB033173, BB620334, BE647088
    Consensus CDS
    CCDS24080.1
    UniProtKB/Swiss-Prot
    Q8BMK4
    Related
    ENSMUSP00000050336.4, ENSMUST00000053871.5
    Conserved Domains (2) summary
    COG1196
    Location:152433
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR00344
    Location:464533
    alaS; alanine--tRNA ligase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    84362169..84369752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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