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Rdh16f2 RDH16 family member 2 [ Mus musculus (house mouse) ]

Gene ID: 216454, updated on 6-May-2021

Summary

Official Symbol
Rdh16f2provided by MGI
Official Full Name
RDH16 family member 2provided by MGI
Primary source
MGI:MGI:3583955
See related
Ensembl:ENSMUSG00000074639
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CRAD-L
Expression
Biased expression in kidney adult (RPKM 164.0) and liver adult (RPKM 115.7) See more
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Genomic context

See Rdh16f2 in Genome Data Viewer
Location:
10; 10 D3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (127702345..127713188)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (127866476..127877319)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (127303532..127314375)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene retinol dehydrogenase 18, pseudogene Neighboring gene retinol dehydrogenase 19 Neighboring gene predicted gene, 31091 Neighboring gene retinol dehydrogenase 7 Neighboring gene 4short chain dehydrogenase/reductase family 9C, member 7

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Homology

Clone Names

  • MGC107618

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables androstan-3-alpha,17-beta-diol dehydrogenase activity ISO
Inferred from Sequence Orthology
more info
 
enables androsterone dehydrogenase activity ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of organelle membrane ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145424.2NP_663399.2  cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like precursor

    See identical proteins and their annotated locations for NP_663399.2

    Status: VALIDATED

    Source sequence(s)
    AI099357, AK144071, AY053572
    Consensus CDS
    CCDS24254.1
    UniProtKB/TrEMBL
    Q8K3M0, Q8K3M1
    Related
    ENSMUSP00000089691.4, ENSMUST00000092058.4
    Conserved Domains (2) summary
    cd09805
    Location:30307
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
    pfam00106
    Location:30219
    adh_short; short chain dehydrogenase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    127702345..127713188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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