Format

Send to:

Choose Destination

Fam171a2 family with sequence similarity 171, member A2 [ Mus musculus (house mouse) ]

Gene ID: 217219, updated on 23-Jun-2021

Summary

Official Symbol
Fam171a2provided by MGI
Official Full Name
family with sequence similarity 171, member A2provided by MGI
Primary source
MGI:MGI:2448496
See related
Ensembl:ENSMUSG00000034685
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in whole brain E14.5 (RPKM 63.7), CNS E18 (RPKM 59.6) and 16 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Fam171a2 in Genome Data Viewer
Location:
11; 11 D
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (102327807..102338551, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (102436981..102447677, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (102298295..102308977, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 25, member 39 Neighboring gene microRNA 6930 Neighboring gene granulin Neighboring gene integrin alpha 2b Neighboring gene G patch domain containing 8 Neighboring gene cytochrome b-c1 complex subunit 10 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199200.2NP_954670.2  protein FAM171A2 precursor

    See identical proteins and their annotated locations for NP_954670.2

    Status: VALIDATED

    Source sequence(s)
    AL596258, CB182176, CB202938, CJ162493
    Consensus CDS
    CCDS36344.1
    UniProtKB/Swiss-Prot
    A2A699
    Related
    ENSMUSP00000038486.5, ENSMUST00000049057.5
    Conserved Domains (1) summary
    pfam10577
    Location:41820
    UPF0560; uncharacterized protein family UPF0560

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    102327807..102338551 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006533049.5XP_006533112.1  protein FAM171A2 isoform X1

    Conserved Domains (1) summary
    pfam10577
    Location:41813
    UPF0560; Uncharacterized protein family UPF0560
Support Center